Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 HLA-A-202ENST00000376806 1854 ntBASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 AC005052.1-201ENST00000625181 2492 ntBASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
DEPDC4Q8N2C3 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 AC105917.1-201ENST00000506637 2539 ntBASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 BANP-201ENST00000286122 2368 ntTSL 5 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 AC233702.3-201ENST00000578656 1387 ntBASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 AC246785.2-201ENST00000432512 513 ntBASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 ANAPC11-217ENST00000579978 575 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
DEPDC4Q8N2C3 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 AC004870.1-201ENST00000315132 882 ntBASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 PON3-205ENST00000451904 1053 ntTSL 3 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 KRT17P6-201ENST00000453795 1220 ntBASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 AC012313.10-201ENST00000623509 926 ntBASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
DEPDC4Q8N2C3 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms