Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC116Q8IYX3 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC116Q8IYX3 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
CCDC116Q8IYX3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC116Q8IYX3 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
CCDC116Q8IYX3 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC15.83■□□□□ 0.13
CCDC116Q8IYX3 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC116Q8IYX3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
CCDC116Q8IYX3 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.13
CCDC116Q8IYX3 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 CSF3-203ENST00000394148 622 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 SLC4A1APP2-201ENST00000424054 1259 ntBASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 AC098831.1-202ENST00000438821 336 ntBASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 AC107918.2-201ENST00000530817 355 ntBASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 CYB561-216ENST00000582297 897 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 AL121894.2-201ENST00000602977 491 ntBASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 HLA-A-201ENST00000376802 1334 ntBASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC15.83■□□□□ 0.12
CCDC116Q8IYX3 AC131009.4-201ENST00000624048 1740 ntBASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 PMS2P1-201ENST00000431037 1228 ntBASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 OR7E47P-204ENST00000575924 449 ntBASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
CCDC116Q8IYX3 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 AC108751.1-201ENST00000490852 363 ntBASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 PENK-208ENST00000523051 772 ntTSL 5 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC15.81■□□□□ 0.12
CCDC116Q8IYX3 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms