Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 AC005498.2-205ENST00000593218 784 ntBASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 AL136317.3-201ENST00000618497 906 ntBASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
UBE3BQ7Z3V4 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 SYS1-203ENST00000414310 795 ntTSL 3 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 AC051619.7-201ENST00000568314 623 ntBASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 AL512652.2-201ENST00000625156 1716 ntBASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
UBE3BQ7Z3V4 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 FOXO1B-201ENST00000504678 1527 ntBASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 AL390955.2-201ENST00000603032 514 ntBASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 AL603756.1-201ENST00000606511 2163 ntBASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.79■□□□□ 0.92
UBE3BQ7Z3V4 TUBB3P1-201ENST00000405796 1332 ntBASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 AC067863.1-201ENST00000494933 530 ntBASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 PRYP6-201ENST00000514804 343 ntBASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 AC105233.2-201ENST00000523697 349 ntBASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 AP002490.2-201ENST00000524791 560 ntBASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 AF228730.5-201ENST00000530288 346 ntBASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 AC073389.1-201ENST00000595595 795 ntBASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 AC105020.1-201ENST00000435356 2205 ntBASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
UBE3BQ7Z3V4 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
UBE3BQ7Z3V4 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms