Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC10.18□□□□□ -0.78
HSPG2P98160 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC10.18□□□□□ -0.78
HSPG2P98160 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC10.17□□□□□ -0.78
HSPG2P98160 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC10.17□□□□□ -0.78
HSPG2P98160 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 RN7SL720P-201ENST00000488178 304 ntBASIC10.17□□□□□ -0.78
HSPG2P98160 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC10.17□□□□□ -0.78
HSPG2P98160 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC10.17□□□□□ -0.78
HSPG2P98160 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC10.17□□□□□ -0.78
HSPG2P98160 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
HSPG2P98160 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC10.17□□□□□ -0.78
HSPG2P98160 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 NKAIN1P1-201ENST00000435754 582 ntBASIC10.17□□□□□ -0.78
HSPG2P98160 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC10.17□□□□□ -0.78
HSPG2P98160 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC10.17□□□□□ -0.78
HSPG2P98160 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC10.17□□□□□ -0.78
HSPG2P98160 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC10.17□□□□□ -0.78
HSPG2P98160 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
HSPG2P98160 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC10.17□□□□□ -0.78
HSPG2P98160 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 LYPLA2-202ENST00000374502 1072 ntTSL 2 BASIC10.17□□□□□ -0.78
HSPG2P98160 SLC25A1P3-201ENST00000395415 828 ntBASIC10.17□□□□□ -0.78
HSPG2P98160 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
HSPG2P98160 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC10.17□□□□□ -0.78
HSPG2P98160 AC124283.3-201ENST00000570869 594 ntBASIC10.17□□□□□ -0.78
HSPG2P98160 MIR3907-201ENST00000579424 151 ntBASIC10.17□□□□□ -0.78
HSPG2P98160 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
HSPG2P98160 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC10.17□□□□□ -0.78
HSPG2P98160 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 RN7SL399P-201ENST00000471648 279 ntBASIC10.17□□□□□ -0.78
HSPG2P98160 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC10.17□□□□□ -0.78
HSPG2P98160 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
HSPG2P98160 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC10.17□□□□□ -0.78
HSPG2P98160 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC10.17□□□□□ -0.78
HSPG2P98160 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC10.16□□□□□ -0.78
HSPG2P98160 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
HSPG2P98160 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 AC005077.2-201ENST00000449786 690 ntBASIC10.16□□□□□ -0.78
HSPG2P98160 AC104784.1-201ENST00000473096 294 ntBASIC10.16□□□□□ -0.78
HSPG2P98160 IMP3P2-201ENST00000489760 475 ntBASIC10.16□□□□□ -0.78
HSPG2P98160 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC10.16□□□□□ -0.78
HSPG2P98160 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC10.16□□□□□ -0.78
HSPG2P98160 AP001350.2-201ENST00000625104 1094 ntBASIC10.16□□□□□ -0.78
HSPG2P98160 RNPS1-205ENST00000561718 1806 ntTSL 3 BASIC10.16□□□□□ -0.78
HSPG2P98160 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
HSPG2P98160 APOA1-205ENST00000375329 927 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 AL591846.1-201ENST00000451736 433 ntBASIC10.16□□□□□ -0.78
HSPG2P98160 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC10.16□□□□□ -0.78
HSPG2P98160 AL022328.3-201ENST00000607943 679 ntBASIC10.16□□□□□ -0.78
HSPG2P98160 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 SNX21-203ENST00000372541 771 ntTSL 2 BASIC10.16□□□□□ -0.78
HSPG2P98160 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
HSPG2P98160 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC10.16□□□□□ -0.78
HSPG2P98160 AL442647.2-201ENST00000429864 857 ntBASIC10.16□□□□□ -0.78
HSPG2P98160 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC10.16□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms