Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC20.57■□□□□ 0.88
NUP98P52948 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.57■□□□□ 0.88
NUP98P52948 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
NUP98P52948 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.57■□□□□ 0.88
NUP98P52948 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
NUP98P52948 AC079776.1-201ENST00000401540 1152 ntBASIC20.57■□□□□ 0.88
NUP98P52948 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.57■□□□□ 0.88
NUP98P52948 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NUP98P52948 AC244107.1-201ENST00000442033 332 ntBASIC20.57■□□□□ 0.88
NUP98P52948 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 NOP2-220ENST00000545915 630 ntTSL 2 BASIC20.57■□□□□ 0.88
NUP98P52948 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC20.57■□□□□ 0.88
NUP98P52948 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC20.57■□□□□ 0.88
NUP98P52948 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
NUP98P52948 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
NUP98P52948 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP98P52948 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC20.56■□□□□ 0.88
NUP98P52948 AL391256.1-201ENST00000443260 1855 ntBASIC20.56■□□□□ 0.88
NUP98P52948 SPDYE19P-201ENST00000338590 713 ntBASIC20.56■□□□□ 0.88
NUP98P52948 U91328.1-201ENST00000437528 223 ntBASIC20.56■□□□□ 0.88
NUP98P52948 RN7SL837P-201ENST00000463010 287 ntBASIC20.56■□□□□ 0.88
NUP98P52948 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC20.56■□□□□ 0.88
NUP98P52948 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NUP98P52948 CHCHD2P3-201ENST00000603038 451 ntBASIC20.56■□□□□ 0.88
NUP98P52948 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
NUP98P52948 AL109936.8-201ENST00000641772 604 ntBASIC20.56■□□□□ 0.88
NUP98P52948 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC20.56■□□□□ 0.88
NUP98P52948 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
NUP98P52948 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP98P52948 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP98P52948 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP98P52948 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP98P52948 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP98P52948 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
NUP98P52948 AC005915.1-201ENST00000624912 2018 ntBASIC20.56■□□□□ 0.88
NUP98P52948 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
NUP98P52948 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC20.55■□□□□ 0.88
NUP98P52948 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 AC114501.2-201ENST00000439631 535 ntBASIC20.55■□□□□ 0.88
NUP98P52948 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC20.55■□□□□ 0.88
NUP98P52948 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP98P52948 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC20.55■□□□□ 0.88
NUP98P52948 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP98P52948 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC20.55■□□□□ 0.88
NUP98P52948 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC20.55■□□□□ 0.88
NUP98P52948 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC20.55■□□□□ 0.88
NUP98P52948 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP98P52948 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
NUP98P52948 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.55■□□□□ 0.88
NUP98P52948 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP98P52948 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP98P52948 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC20.55■□□□□ 0.88
NUP98P52948 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
NUP98P52948 NME2P1-201ENST00000426182 414 ntBASIC20.55■□□□□ 0.88
NUP98P52948 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP98P52948 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP98P52948 GIMAP3P-201ENST00000495150 836 ntBASIC20.55■□□□□ 0.88
NUP98P52948 IGHV3-71-201ENST00000523324 359 ntBASIC20.55■□□□□ 0.88
NUP98P52948 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC20.55■□□□□ 0.88
NUP98P52948 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.55■□□□□ 0.88
NUP98P52948 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.55■□□□□ 0.88
NUP98P52948 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
NUP98P52948 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 EML3-217ENST00000531557 2509 ntTSL 5 BASIC20.54■□□□□ 0.88
NUP98P52948 HLA-A-202ENST00000376806 1854 ntBASIC20.54■□□□□ 0.88
NUP98P52948 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC20.54■□□□□ 0.88
NUP98P52948 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
NUP98P52948 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
NUP98P52948 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC20.54■□□□□ 0.88
NUP98P52948 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC20.54■□□□□ 0.88
NUP98P52948 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.54■□□□□ 0.88
NUP98P52948 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC20.54■□□□□ 0.88
NUP98P52948 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms