Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 POM121L3P-201ENST00000419331 1163 ntBASIC12.84□□□□□ -0.35
HLA-DMBP28068 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 ABCD1P5-201ENST00000445663 754 ntBASIC12.84□□□□□ -0.35
HLA-DMBP28068 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 BX005266.1-201ENST00000473402 457 ntBASIC12.84□□□□□ -0.35
HLA-DMBP28068 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 COX5A-204ENST00000567270 579 ntTSL 3 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 CCNC-219ENST00000627680 896 ntTSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 AC026691.1-201ENST00000602502 2017 ntBASIC12.84□□□□□ -0.35
HLA-DMBP28068 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
HLA-DMBP28068 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.35
HLA-DMBP28068 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.35
HLA-DMBP28068 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
HLA-DMBP28068 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC12.83□□□□□ -0.35
HLA-DMBP28068 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
HLA-DMBP28068 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.35
HLA-DMBP28068 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC12.83□□□□□ -0.35
HLA-DMBP28068 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 AMT-206ENST00000458307 1860 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 RBSN-204ENST00000449050 903 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 EMBP1-201ENST00000458200 901 ntBASIC12.83□□□□□ -0.36
HLA-DMBP28068 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 FICD-205ENST00000552758 603 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 KLK8-205ENST00000593490 267 ntTSL 3 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 AL591684.3-201ENST00000605187 298 ntBASIC12.83□□□□□ -0.36
HLA-DMBP28068 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 AC079776.2-201ENST00000641154 1609 ntBASIC12.83□□□□□ -0.36
HLA-DMBP28068 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC12.83□□□□□ -0.36
HLA-DMBP28068 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
HLA-DMBP28068 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
HLA-DMBP28068 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC12.82□□□□□ -0.36
HLA-DMBP28068 OVCH1-AS1-204ENST00000641955 5529 ntBASIC12.82□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms