Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
VCANP13611 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC17.09■□□□□ 0.33
VCANP13611 AC004408.2-201ENST00000623613 2777 ntBASIC17.09■□□□□ 0.33
VCANP13611 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
VCANP13611 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
VCANP13611 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCANP13611 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCANP13611 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCANP13611 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCANP13611 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCANP13611 HIST2H2BC-201ENST00000498492 580 ntBASIC17.08■□□□□ 0.33
VCANP13611 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC17.08■□□□□ 0.33
VCANP13611 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCANP13611 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC17.08■□□□□ 0.33
VCANP13611 RN7SL828P-201ENST00000607615 303 ntBASIC17.08■□□□□ 0.33
VCANP13611 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCANP13611 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCANP13611 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
VCANP13611 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VCANP13611 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCANP13611 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.08■□□□□ 0.32
VCANP13611 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCANP13611 RN7SL720P-201ENST00000488178 304 ntBASIC17.08■□□□□ 0.32
VCANP13611 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC17.08■□□□□ 0.32
VCANP13611 AC068587.3-201ENST00000526613 355 ntBASIC17.08■□□□□ 0.32
VCANP13611 AC018635.2-201ENST00000608625 364 ntBASIC17.08■□□□□ 0.32
VCANP13611 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCANP13611 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCANP13611 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VCANP13611 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
VCANP13611 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
VCANP13611 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCANP13611 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCANP13611 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC17.08■□□□□ 0.32
VCANP13611 TPO-206ENST00000382269 1155 ntTSL 5 BASIC17.08■□□□□ 0.32
VCANP13611 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC17.08■□□□□ 0.32
VCANP13611 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC17.08■□□□□ 0.32
VCANP13611 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC17.08■□□□□ 0.32
VCANP13611 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.08■□□□□ 0.32
VCANP13611 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCANP13611 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VCANP13611 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC17.07■□□□□ 0.32
VCANP13611 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
VCANP13611 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.07■□□□□ 0.32
VCANP13611 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 FAM220BP-201ENST00000377689 816 ntBASIC17.07■□□□□ 0.32
VCANP13611 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC17.07■□□□□ 0.32
VCANP13611 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC17.07■□□□□ 0.32
VCANP13611 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.07■□□□□ 0.32
VCANP13611 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.07■□□□□ 0.32
VCANP13611 ABBA01031663.1-201ENST00000635630 790 ntBASIC17.07■□□□□ 0.32
VCANP13611 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.07■□□□□ 0.32
VCANP13611 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
VCANP13611 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.07■□□□□ 0.32
VCANP13611 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC17.07■□□□□ 0.32
VCANP13611 DUTP2-201ENST00000519164 463 ntBASIC17.07■□□□□ 0.32
VCANP13611 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.07■□□□□ 0.32
VCANP13611 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.07■□□□□ 0.32
VCANP13611 ABBA01031660.1-201ENST00000635219 756 ntBASIC17.07■□□□□ 0.32
VCANP13611 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
VCANP13611 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC17.07■□□□□ 0.32
VCANP13611 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.07■□□□□ 0.32
VCANP13611 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.07■□□□□ 0.32
VCANP13611 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCANP13611 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC17.06■□□□□ 0.32
VCANP13611 IGHV3-52-201ENST00000519770 353 ntBASIC17.06■□□□□ 0.32
VCANP13611 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC17.06■□□□□ 0.32
VCANP13611 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC17.06■□□□□ 0.32
VCANP13611 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC17.06■□□□□ 0.32
VCANP13611 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.06■□□□□ 0.32
VCANP13611 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VCANP13611 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VCANP13611 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCANP13611 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms