Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
SLC28A1O00337 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 FGFR3P6-201ENST00000457012 610 ntBASIC16.17■□□□□ 0.18
SLC28A1O00337 AC087163.2-201ENST00000457299 853 ntBASIC16.17■□□□□ 0.18
SLC28A1O00337 SCARNA2-201ENST00000458748 420 ntBASIC16.17■□□□□ 0.18
SLC28A1O00337 KRT18P31-201ENST00000506277 1292 ntBASIC16.17■□□□□ 0.18
SLC28A1O00337 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC16.17■□□□□ 0.18
SLC28A1O00337 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC28A1O00337 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 MIR4492-201ENST00000581627 80 ntBASIC16.17■□□□□ 0.18
SLC28A1O00337 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC28A1O00337 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
SLC28A1O00337 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC28A1O00337 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC28A1O00337 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.17■□□□□ 0.18
SLC28A1O00337 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC28A1O00337 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
SLC28A1O00337 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.17■□□□□ 0.18
SLC28A1O00337 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC28A1O00337 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC28A1O00337 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SLC28A1O00337 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC28A1O00337 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SLC28A1O00337 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC28A1O00337 PTCHD3P3-201ENST00000403073 906 ntBASIC16.16■□□□□ 0.18
SLC28A1O00337 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
SLC28A1O00337 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC28A1O00337 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC28A1O00337 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 SART3-203ENST00000546611 1184 ntBASIC16.16■□□□□ 0.18
SLC28A1O00337 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC28A1O00337 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 KRT8P39-201ENST00000396270 1433 ntBASIC16.16■□□□□ 0.18
SLC28A1O00337 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
SLC28A1O00337 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SLC28A1O00337 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
SLC28A1O00337 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
SLC28A1O00337 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.16■□□□□ 0.18
SLC28A1O00337 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.16■□□□□ 0.18
SLC28A1O00337 SNX33P1-201ENST00000592116 1762 ntBASIC16.15■□□□□ 0.18
SLC28A1O00337 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
SLC28A1O00337 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.15■□□□□ 0.18
SLC28A1O00337 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SLC28A1O00337 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.15■□□□□ 0.18
SLC28A1O00337 AC002310.6-201ENST00000624451 1377 ntBASIC16.15■□□□□ 0.18
SLC28A1O00337 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
SLC28A1O00337 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
SLC28A1O00337 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.15■□□□□ 0.18
SLC28A1O00337 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 UPK3BP1-201ENST00000428678 509 ntBASIC16.15■□□□□ 0.18
SLC28A1O00337 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC16.15■□□□□ 0.18
SLC28A1O00337 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC16.15■□□□□ 0.18
SLC28A1O00337 AC091304.2-201ENST00000564639 760 ntBASIC16.15■□□□□ 0.18
SLC28A1O00337 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.15■□□□□ 0.18
SLC28A1O00337 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC16.15■□□□□ 0.18
SLC28A1O00337 AC091167.2-201ENST00000579581 588 ntBASIC16.15■□□□□ 0.18
SLC28A1O00337 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.15■□□□□ 0.18
SLC28A1O00337 PI4KAP1-204ENST00000612579 1703 ntBASIC16.15■□□□□ 0.18
SLC28A1O00337 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
SLC28A1O00337 REXO1L3P-201ENST00000622202 1288 ntBASIC16.15■□□□□ 0.18
SLC28A1O00337 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms