Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 MIR3652-201ENST00000579335 131 ntBASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 AL121772.3-201ENST00000610840 674 ntBASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PCDHA3Q9Y5H8 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 PI4KAP1-204ENST00000612579 1703 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 AC131009.4-201ENST00000624048 1740 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 MIR1224-201ENST00000408193 85 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 TSPY19P-201ENST00000418461 509 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 TSPY18P-201ENST00000441642 509 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 SLC25A6P2-201ENST00000497974 877 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 AC091167.2-201ENST00000579581 588 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 AC008608.2-201ENST00000606089 416 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 AC132872.4-202ENST00000622924 2756 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 AL596087.1-201ENST00000400979 1969 ntBASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PCDHA3Q9Y5H8 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.52■□□□□ 0.4
PCDHA3Q9Y5H8 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC17.52■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms