Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 EGFEM1P-202ENST00000431685 1563 ntBASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA1Q9Y5H4 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 ZNF846-205ENST00000588267 1943 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 AL353705.2-201ENST00000428243 662 ntBASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA1Q9Y5H4 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 PTPA-220ENST00000436883 532 ntTSL 4 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PCDHGA1Q9Y5H4 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PCDHGA1Q9Y5H4 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms