Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 AC009712.1-201ENST00000564938 316 ntBASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 AL773604.1-201ENST00000617417 272 ntBASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 AC131009.4-201ENST00000624048 1740 ntBASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VPS9D1Q9Y2B5 RPL23A-204ENST00000422514 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 FER1L4-210ENST00000615531 5998 ntBASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 MRPL20P1-201ENST00000400819 433 ntBASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 HCG4-201ENST00000418983 998 ntBASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 MIR4492-201ENST00000581627 80 ntBASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 AL158211.2-201ENST00000607282 395 ntBASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VPS9D1Q9Y2B5 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 AC124067.4-201ENST00000519691 2379 ntBASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 AC087641.1-201ENST00000557561 1021 ntBASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 IRF5-214ENST00000613821 595 ntTSL 5 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
VPS9D1Q9Y2B5 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.26
VPS9D1Q9Y2B5 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.71■□□□□ 0.26
VPS9D1Q9Y2B5 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms