Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 RAB17-203ENST00000409576 466 ntTSL 3 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 LAGE3P1-201ENST00000425356 484 ntBASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 AL031731.1-201ENST00000642131 2094 ntBASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 AC131009.4-201ENST00000624048 1740 ntBASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LIMCH1Q9UPQ0 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 GGT4P-201ENST00000623672 1708 ntBASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 PNMT-203ENST00000581428 677 ntTSL 2 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 AC006557.2-201ENST00000592985 1240 ntBASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 AC107918.4-202ENST00000641623 219 ntBASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 SLC22A20-204ENST00000530038 1673 ntBASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
LIMCH1Q9UPQ0 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LIMCH1Q9UPQ0 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
LIMCH1Q9UPQ0 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.77■□□□□ 0.75
LIMCH1Q9UPQ0 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LIMCH1Q9UPQ0 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
LIMCH1Q9UPQ0 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
LIMCH1Q9UPQ0 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
LIMCH1Q9UPQ0 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 HIST2H3DP1-201ENST00000401004 416 ntBASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 PMS2P1-201ENST00000431037 1228 ntBASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 LINC01711-201ENST00000598340 967 ntBASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 CROCCP1-201ENST00000426910 5675 ntBASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LIMCH1Q9UPQ0 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 KRT18P27-201ENST00000427733 1299 ntBASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 AC107918.2-201ENST00000530817 355 ntBASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.75■□□□□ 0.75
LIMCH1Q9UPQ0 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms