Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 SPCS2P4-201ENST00000436160 681 ntBASIC17.68■□□□□ 0.42
CDH9Q9ULB4 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 KRT18P34-201ENST00000488218 1270 ntBASIC17.68■□□□□ 0.42
CDH9Q9ULB4 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 KRT18P28-201ENST00000453838 1332 ntBASIC17.68■□□□□ 0.42
CDH9Q9ULB4 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.68■□□□□ 0.42
CDH9Q9ULB4 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 AL627223.1-201ENST00000416693 442 ntBASIC17.67■□□□□ 0.42
CDH9Q9ULB4 AC005237.2-201ENST00000434368 219 ntBASIC17.67■□□□□ 0.42
CDH9Q9ULB4 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 RNF34-208ENST00000555076 593 ntTSL 3 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CDH9Q9ULB4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.66■□□□□ 0.42
CDH9Q9ULB4 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 AC023141.5-201ENST00000458585 616 ntBASIC17.66■□□□□ 0.42
CDH9Q9ULB4 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 IGHV3-62-201ENST00000520057 340 ntBASIC17.66■□□□□ 0.42
CDH9Q9ULB4 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 KRT8P23-201ENST00000560090 1207 ntBASIC17.66■□□□□ 0.42
CDH9Q9ULB4 LINC01225-203ENST00000563550 1244 ntBASIC17.66■□□□□ 0.42
CDH9Q9ULB4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDH9Q9ULB4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDH9Q9ULB4 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDH9Q9ULB4 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms