Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 KRT17P7-201ENST00000451704 1104 ntBASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 NAA50-208ENST00000497255 789 ntTSL 5 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
LIMD1Q9UGP4 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 ATP5G2P4-201ENST00000442175 420 ntBASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
LIMD1Q9UGP4 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 AC022144.1-201ENST00000602255 1580 ntBASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 TSSK5P-201ENST00000423978 907 ntBASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 BX547991.1-201ENST00000582543 1206 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
LIMD1Q9UGP4 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms