Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 AC005237.2-201ENST00000434368 219 ntBASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 AC069335.1-201ENST00000489972 472 ntBASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 HLA-J-203ENST00000494367 1087 ntBASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 SIGLEC29P-201ENST00000599873 1114 ntBASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 AC021097.1-201ENST00000607902 574 ntBASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 AC093028.1-201ENST00000622998 982 ntBASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC14.9□□□□□ -0.02
CLCF1Q9UBD9 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 AC006277.1-201ENST00000624348 1610 ntBASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 AL645939.2-201ENST00000427340 991 ntBASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 SPCS2P4-201ENST00000436160 681 ntBASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 CYMP-203ENST00000474680 1263 ntBASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 KIAA0930-215ENST00000496226 589 ntTSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 AL355385.1-201ENST00000606123 409 ntBASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 APMAP-201ENST00000217456 2430 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 AC016027.1-202ENST00000607927 1699 ntBASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 BANP-227ENST00000626016 2144 ntTSL 2 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC14.89□□□□□ -0.03
CLCF1Q9UBD9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
CLCF1Q9UBD9 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 37.5 ms