Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC21.53■■□□□ 1.04
SMC4Q9NTJ3 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 KRT18P2-201ENST00000447938 1258 ntBASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 AC096734.2-201ENST00000562054 433 ntBASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 AP001350.2-201ENST00000625104 1094 ntBASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
SMC4Q9NTJ3 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.03
SMC4Q9NTJ3 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 HS6ST1P1-201ENST00000481504 1234 ntBASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 PIN1-206ENST00000587625 878 ntTSL 2 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 AL512652.2-201ENST00000625156 1716 ntBASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SMC4Q9NTJ3 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 KRT8P39-201ENST00000396270 1433 ntBASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 RHOQP3-201ENST00000437982 621 ntBASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 MIR4515-201ENST00000584082 81 ntBASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 AC140113.2-201ENST00000604370 208 ntBASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 AL118508.1-201ENST00000613502 2345 ntBASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SMC4Q9NTJ3 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
SMC4Q9NTJ3 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SMC4Q9NTJ3 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms