Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 COX5A-202ENST00000562233 441 ntTSL 3 BASIC16.67■□□□□ 0.26
SSU72Q9NP77 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.67■□□□□ 0.26
SSU72Q9NP77 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.67■□□□□ 0.26
SSU72Q9NP77 AC012306.2-201ENST00000609350 630 ntBASIC16.67■□□□□ 0.26
SSU72Q9NP77 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.67■□□□□ 0.26
SSU72Q9NP77 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.67■□□□□ 0.26
SSU72Q9NP77 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
SSU72Q9NP77 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SSU72Q9NP77 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SSU72Q9NP77 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SSU72Q9NP77 HYMAI-201ENST00000635591 3347 ntBASIC16.67■□□□□ 0.26
SSU72Q9NP77 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SSU72Q9NP77 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
SSU72Q9NP77 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SSU72Q9NP77 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
SSU72Q9NP77 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
SSU72Q9NP77 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
SSU72Q9NP77 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.67■□□□□ 0.26
SSU72Q9NP77 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
SSU72Q9NP77 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
SSU72Q9NP77 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
SSU72Q9NP77 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.67■□□□□ 0.26
SSU72Q9NP77 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.66■□□□□ 0.26
SSU72Q9NP77 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.66■□□□□ 0.26
SSU72Q9NP77 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 AK4P3-201ENST00000418260 669 ntBASIC16.66■□□□□ 0.26
SSU72Q9NP77 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 AP005901.3-202ENST00000581653 237 ntBASIC16.66■□□□□ 0.26
SSU72Q9NP77 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.66■□□□□ 0.26
SSU72Q9NP77 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC16.66■□□□□ 0.26
SSU72Q9NP77 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
SSU72Q9NP77 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 AC069224.1-201ENST00000566372 1715 ntBASIC16.65■□□□□ 0.26
SSU72Q9NP77 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 TK2-213ENST00000563369 882 ntTSL 5 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 AC006011.2-201ENST00000621313 1158 ntBASIC16.65■□□□□ 0.26
SSU72Q9NP77 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 AC092850.2-201ENST00000623821 2697 ntBASIC16.65■□□□□ 0.26
SSU72Q9NP77 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC16.65■□□□□ 0.26
SSU72Q9NP77 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
SSU72Q9NP77 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms