Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 COX20P2-201ENST00000452636 358 ntBASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 MIR4745-201ENST00000577608 62 ntBASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TM9SF3Q9HD45 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 AC012569.1-201ENST00000591191 1524 ntBASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 SPCS2P4-201ENST00000436160 681 ntBASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 AC093214.1-201ENST00000511688 1107 ntBASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 RNA5SP421-201ENST00000516864 134 ntBASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 AL512356.2-201ENST00000546955 174 ntBASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC16.77■□□□□ 0.28
TM9SF3Q9HD45 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TM9SF3Q9HD45 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 BSG-215ENST00000618006 1329 ntTSL 2 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 AL009183.1-201ENST00000603760 355 ntBASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 AP001059.3-201ENST00000619053 235 ntBASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 AC011676.5-201ENST00000624864 2660 ntBASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.76■□□□□ 0.27
TM9SF3Q9HD45 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms