Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 AL662844.1-201ENST00000546340 181 ntBASIC17.35■□□□□ 0.37
PCDH9Q9HC56 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 SLC25A6P4-201ENST00000586535 553 ntBASIC17.35■□□□□ 0.37
PCDH9Q9HC56 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.35■□□□□ 0.37
PCDH9Q9HC56 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
PCDH9Q9HC56 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 LINC02199-201ENST00000506655 2702 ntBASIC17.34■□□□□ 0.37
PCDH9Q9HC56 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 INIP-202ENST00000374236 874 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 PCDHA1-201ENST00000378133 2726 ntBASIC17.34■□□□□ 0.37
PCDH9Q9HC56 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 AL031284.1-201ENST00000419297 478 ntBASIC17.34■□□□□ 0.37
PCDH9Q9HC56 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 AC006504.4-201ENST00000592118 1568 ntBASIC17.34■□□□□ 0.37
PCDH9Q9HC56 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 AC008735.5-201ENST00000623544 497 ntBASIC17.34■□□□□ 0.37
PCDH9Q9HC56 FAM215A-202ENST00000632077 792 ntBASIC17.34■□□□□ 0.37
PCDH9Q9HC56 ABBA01031661.1-201ENST00000634362 1253 ntBASIC17.34■□□□□ 0.37
PCDH9Q9HC56 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
PCDH9Q9HC56 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 AC022188.1-201ENST00000620960 1664 ntBASIC17.33■□□□□ 0.37
PCDH9Q9HC56 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC17.33■□□□□ 0.37
PCDH9Q9HC56 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms