Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 EML3-217ENST00000531557 2509 ntTSL 5 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PAAF1Q9BRP4 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 UGT1A2P-201ENST00000454886 866 ntBASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 PRYP6-201ENST00000514804 343 ntBASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PAAF1Q9BRP4 AL512652.2-201ENST00000625156 1716 ntBASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 CEP83-AS1-201ENST00000623122 2482 ntBASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 AC097493.3-201ENST00000509725 367 ntBASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 RARRES2P9-201ENST00000565168 469 ntBASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 MIR4745-201ENST00000577608 62 ntBASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 AL390754.1-201ENST00000619088 582 ntBASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PAAF1Q9BRP4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 MIR661-201ENST00000384842 89 ntBASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 AC092580.3-201ENST00000430932 139 ntBASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PAAF1Q9BRP4 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
PAAF1Q9BRP4 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
PAAF1Q9BRP4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC17.77■□□□□ 0.43
PAAF1Q9BRP4 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms