Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CLHC1Q8NHS4 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 AL391005.1-201ENST00000623953 2435 ntBASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 PCDHA1-201ENST00000378133 2726 ntBASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 AC106795.1-205ENST00000512851 1056 ntBASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 MTDHP3-201ENST00000594186 672 ntBASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 AL022326.1-202ENST00000641533 845 ntBASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 NCF1C-201ENST00000438382 1427 ntBASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 KRT8P49-201ENST00000604166 1432 ntBASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 AC026691.1-201ENST00000602502 2017 ntBASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CLHC1Q8NHS4 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 AL356309.3-201ENST00000624132 1934 ntBASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CLHC1Q8NHS4 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms