Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 AL589987.1-201ENST00000453380 819 ntBASIC20.86■□□□□ 0.93
RC3H1Q5TC82 AC119751.2-201ENST00000504529 210 ntBASIC20.86■□□□□ 0.93
RC3H1Q5TC82 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 AC123567.1-201ENST00000548294 1261 ntBASIC20.86■□□□□ 0.93
RC3H1Q5TC82 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 MIR4259-201ENST00000584466 101 ntBASIC20.86■□□□□ 0.93
RC3H1Q5TC82 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 MIR6069-201ENST00000620069 79 ntBASIC20.86■□□□□ 0.93
RC3H1Q5TC82 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 FIBIN-201ENST00000318627 1938 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 RHBDF1P1-201ENST00000427504 1941 ntBASIC20.86■□□□□ 0.93
RC3H1Q5TC82 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
RC3H1Q5TC82 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 AC098850.1-201ENST00000419919 790 ntBASIC20.85■□□□□ 0.93
RC3H1Q5TC82 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 AC092337.1-201ENST00000568699 1129 ntBASIC20.85■□□□□ 0.93
RC3H1Q5TC82 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 AC093726.1-201ENST00000608064 963 ntBASIC20.85■□□□□ 0.93
RC3H1Q5TC82 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC20.85■□□□□ 0.93
RC3H1Q5TC82 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 RRP7BP-205ENST00000566851 833 ntBASIC20.84■□□□□ 0.93
RC3H1Q5TC82 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 AL109936.8-201ENST00000641772 604 ntBASIC20.84■□□□□ 0.93
RC3H1Q5TC82 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
RC3H1Q5TC82 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
RC3H1Q5TC82 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
RC3H1Q5TC82 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
RC3H1Q5TC82 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
RC3H1Q5TC82 AC087289.5-201ENST00000586076 3175 ntBASIC20.83■□□□□ 0.93
RC3H1Q5TC82 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms