Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 SLC25A6P2-201ENST00000497974 877 ntBASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 AC011270.2-201ENST00000624293 2550 ntBASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
PTCHD3Q3KNS1 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 AL118508.1-201ENST00000613502 2345 ntBASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 AC008667.4-201ENST00000607370 168 ntBASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 GGTLC5P-201ENST00000617623 998 ntBASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 REXO1L3P-201ENST00000622202 1288 ntBASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
PTCHD3Q3KNS1 AC079328.2-201ENST00000561241 3354 ntBASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 AC018695.7-201ENST00000624587 2492 ntBASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 AC040169.1-201ENST00000565382 521 ntBASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 AC010327.4-202ENST00000591484 748 ntBASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 HLA-A-202ENST00000376806 1854 ntBASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
PTCHD3Q3KNS1 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.4■□□□□ 0.22
PTCHD3Q3KNS1 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 55.9 ms