Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MIR1909-201ENST00000411312 80 ntBASIC16.54■□□□□ 0.24
LIMK1P53667 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.54■□□□□ 0.24
LIMK1P53667 ACA64.2-201ENST00000459014 129 ntBASIC16.54■□□□□ 0.24
LIMK1P53667 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
LIMK1P53667 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.54■□□□□ 0.24
LIMK1P53667 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
LIMK1P53667 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
LIMK1P53667 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
LIMK1P53667 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC16.53■□□□□ 0.24
LIMK1P53667 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LIMK1P53667 HLA-DQB1-201ENST00000374943 1656 ntBASIC16.53■□□□□ 0.24
LIMK1P53667 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.53■□□□□ 0.24
LIMK1P53667 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
LIMK1P53667 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
LIMK1P53667 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC16.53■□□□□ 0.24
LIMK1P53667 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.53■□□□□ 0.24
LIMK1P53667 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.53■□□□□ 0.24
LIMK1P53667 HLA-V-204ENST00000476601 1289 ntBASIC16.53■□□□□ 0.24
LIMK1P53667 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.53■□□□□ 0.24
LIMK1P53667 AC027307.2-201ENST00000591252 911 ntBASIC16.53■□□□□ 0.24
LIMK1P53667 AL132655.2-201ENST00000596276 594 ntBASIC16.53■□□□□ 0.24
LIMK1P53667 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
LIMK1P53667 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.53■□□□□ 0.24
LIMK1P53667 AL118508.1-201ENST00000613502 2345 ntBASIC16.53■□□□□ 0.24
LIMK1P53667 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.53■□□□□ 0.24
LIMK1P53667 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LIMK1P53667 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
LIMK1P53667 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
LIMK1P53667 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
LIMK1P53667 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.52■□□□□ 0.24
LIMK1P53667 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
LIMK1P53667 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
LIMK1P53667 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
LIMK1P53667 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 AC079776.1-201ENST00000401540 1152 ntBASIC16.52■□□□□ 0.24
LIMK1P53667 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 AC009477.1-201ENST00000452936 217 ntBASIC16.52■□□□□ 0.24
LIMK1P53667 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC16.52■□□□□ 0.24
LIMK1P53667 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
LIMK1P53667 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC16.52■□□□□ 0.24
LIMK1P53667 API5-211ENST00000534695 560 ntTSL 5 BASIC16.52■□□□□ 0.24
LIMK1P53667 SPDYE12P-201ENST00000618416 771 ntBASIC16.52■□□□□ 0.24
LIMK1P53667 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIMK1P53667 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
LIMK1P53667 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC16.52■□□□□ 0.23
LIMK1P53667 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
LIMK1P53667 AC009949.1-201ENST00000623048 1830 ntBASIC16.52■□□□□ 0.23
LIMK1P53667 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIMK1P53667 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
LIMK1P53667 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC16.51■□□□□ 0.23
LIMK1P53667 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LIMK1P53667 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
LIMK1P53667 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.51■□□□□ 0.23
LIMK1P53667 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.51■□□□□ 0.23
LIMK1P53667 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.51■□□□□ 0.23
LIMK1P53667 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
LIMK1P53667 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.51■□□□□ 0.23
LIMK1P53667 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.51■□□□□ 0.23
LIMK1P53667 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC16.51■□□□□ 0.23
LIMK1P53667 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC16.51■□□□□ 0.23
LIMK1P53667 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
LIMK1P53667 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.51■□□□□ 0.23
LIMK1P53667 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms