Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 AC125634.1-201ENST00000438758 1403 ntBASIC16.09■□□□□ 0.17
MSX2P35548 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
MSX2P35548 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.09■□□□□ 0.17
MSX2P35548 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.08■□□□□ 0.17
MSX2P35548 Z83836.1-201ENST00000624605 1642 ntBASIC16.08■□□□□ 0.17
MSX2P35548 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
MSX2P35548 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
MSX2P35548 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
MSX2P35548 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC16.08■□□□□ 0.17
MSX2P35548 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.08■□□□□ 0.17
MSX2P35548 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
MSX2P35548 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.08■□□□□ 0.16
MSX2P35548 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC16.08■□□□□ 0.16
MSX2P35548 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
MSX2P35548 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
MSX2P35548 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC16.08■□□□□ 0.16
MSX2P35548 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.08■□□□□ 0.16
MSX2P35548 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.08■□□□□ 0.16
MSX2P35548 SLC25A48-202ENST00000412661 1148 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 AC122714.2-201ENST00000502787 707 ntBASIC16.08■□□□□ 0.16
MSX2P35548 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC16.08■□□□□ 0.16
MSX2P35548 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.08■□□□□ 0.16
MSX2P35548 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC16.08■□□□□ 0.16
MSX2P35548 AC073912.3-201ENST00000624414 853 ntBASIC16.08■□□□□ 0.16
MSX2P35548 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
MSX2P35548 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 AC013268.4-201ENST00000637413 2228 ntBASIC16.08■□□□□ 0.16
MSX2P35548 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.08■□□□□ 0.16
MSX2P35548 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
MSX2P35548 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
MSX2P35548 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
MSX2P35548 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 STARP1-201ENST00000397973 869 ntBASIC16.07■□□□□ 0.16
MSX2P35548 AC103564.2-201ENST00000432853 1299 ntBASIC16.07■□□□□ 0.16
MSX2P35548 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
MSX2P35548 GXYLT1P3-201ENST00000453058 1193 ntBASIC16.07■□□□□ 0.16
MSX2P35548 AL359075.1-203ENST00000462729 1002 ntBASIC16.07■□□□□ 0.16
MSX2P35548 SNX5-210ENST00000481323 562 ntTSL 3 BASIC16.07■□□□□ 0.16
MSX2P35548 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.07■□□□□ 0.16
MSX2P35548 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 AC011558.1-201ENST00000623459 338 ntBASIC16.07■□□□□ 0.16
MSX2P35548 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.07■□□□□ 0.16
MSX2P35548 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC16.07■□□□□ 0.16
MSX2P35548 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.07■□□□□ 0.16
MSX2P35548 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.07■□□□□ 0.16
MSX2P35548 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.07■□□□□ 0.16
MSX2P35548 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
MSX2P35548 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
MSX2P35548 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms