Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 TBCB-205ENST00000585746 875 ntTSL 3 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC12.86□□□□□ -0.35
HLA-DMBP28068 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
HLA-DMBP28068 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 AC005052.1-201ENST00000625181 2492 ntBASIC12.85□□□□□ -0.35
HLA-DMBP28068 PCDHA1-201ENST00000378133 2726 ntBASIC12.85□□□□□ -0.35
HLA-DMBP28068 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 MED16-201ENST00000269814 1199 ntTSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 FAAHP1-202ENST00000446499 1238 ntBASIC12.85□□□□□ -0.35
HLA-DMBP28068 S100A2-206ENST00000497140 697 ntTSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 DUX4L17-201ENST00000557360 1267 ntBASIC12.85□□□□□ -0.35
HLA-DMBP28068 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 TPM1-218ENST00000559281 851 ntTSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 MIR5100-201ENST00000579544 119 ntBASIC12.85□□□□□ -0.35
HLA-DMBP28068 GZMM-202ENST00000592501 941 ntTSL 3 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 TUBB8P12-201ENST00000308911 1335 ntBASIC12.85□□□□□ -0.35
HLA-DMBP28068 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 TUBB7P-202ENST00000428444 1305 ntBASIC12.85□□□□□ -0.35
HLA-DMBP28068 TUBB8P7-204ENST00000567960 1332 ntBASIC12.85□□□□□ -0.35
HLA-DMBP28068 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC12.85□□□□□ -0.35
HLA-DMBP28068 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
HLA-DMBP28068 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 AL391005.1-201ENST00000623953 2435 ntBASIC12.84□□□□□ -0.35
HLA-DMBP28068 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
HLA-DMBP28068 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
HLA-DMBP28068 SOD2-201ENST00000337404 991 ntTSL 2 BASIC12.84□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms