Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
COL4A1P02462 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC20.24■□□□□ 0.83
COL4A1P02462 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
COL4A1P02462 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.24■□□□□ 0.83
COL4A1P02462 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC20.24■□□□□ 0.83
COL4A1P02462 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC20.24■□□□□ 0.83
COL4A1P02462 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.24■□□□□ 0.83
COL4A1P02462 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC20.24■□□□□ 0.83
COL4A1P02462 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC20.24■□□□□ 0.83
COL4A1P02462 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
COL4A1P02462 AC004233.3-201ENST00000607794 1269 ntBASIC20.24■□□□□ 0.83
COL4A1P02462 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
COL4A1P02462 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC20.24■□□□□ 0.83
COL4A1P02462 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.24■□□□□ 0.83
COL4A1P02462 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 IMPDH1P4-201ENST00000445028 1534 ntBASIC20.24■□□□□ 0.83
COL4A1P02462 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.24■□□□□ 0.83
COL4A1P02462 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL4A1P02462 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL4A1P02462 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 NME2P1-201ENST00000426182 414 ntBASIC20.23■□□□□ 0.83
COL4A1P02462 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 AC098859.1-201ENST00000502915 1238 ntBASIC20.23■□□□□ 0.83
COL4A1P02462 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A1P02462 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A1P02462 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A1P02462 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC20.23■□□□□ 0.83
COL4A1P02462 AC140912.1-201ENST00000577171 1054 ntBASIC20.23■□□□□ 0.83
COL4A1P02462 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC20.23■□□□□ 0.83
COL4A1P02462 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A1P02462 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC20.23■□□□□ 0.83
COL4A1P02462 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC20.23■□□□□ 0.83
COL4A1P02462 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
COL4A1P02462 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC20.23■□□□□ 0.83
COL4A1P02462 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
COL4A1P02462 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL4A1P02462 AC078925.2-201ENST00000624013 1973 ntBASIC20.23■□□□□ 0.83
COL4A1P02462 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
COL4A1P02462 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL4A1P02462 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 AC079776.1-201ENST00000401540 1152 ntBASIC20.22■□□□□ 0.83
COL4A1P02462 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC20.22■□□□□ 0.83
COL4A1P02462 RAB35-202ENST00000534951 939 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A1P02462 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.22■□□□□ 0.83
COL4A1P02462 AL139011.1-202ENST00000642063 584 ntBASIC20.22■□□□□ 0.83
COL4A1P02462 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.22■□□□□ 0.83
COL4A1P02462 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
COL4A1P02462 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL4A1P02462 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
COL4A1P02462 AL589702.1-201ENST00000641229 1509 ntBASIC20.22■□□□□ 0.83
COL4A1P02462 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL4A1P02462 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A1P02462 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 OR8S1-201ENST00000310194 1080 ntBASIC20.22■□□□□ 0.83
COL4A1P02462 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 DGCR5-201ENST00000399539 862 ntBASIC20.22■□□□□ 0.83
COL4A1P02462 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A1P02462 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A1P02462 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A1P02462 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A1P02462 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC20.22■□□□□ 0.83
COL4A1P02462 CHCHD2P3-201ENST00000603038 451 ntBASIC20.22■□□□□ 0.83
COL4A1P02462 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
COL4A1P02462 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A1P02462 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A1P02462 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A1P02462 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms