Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL2A1P02458 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL2A1P02458 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.35■□□□□ 0.69
COL2A1P02458 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC19.35■□□□□ 0.69
COL2A1P02458 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL2A1P02458 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL2A1P02458 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
COL2A1P02458 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL2A1P02458 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
COL2A1P02458 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
COL2A1P02458 SERBP1P3-201ENST00000459980 809 ntBASIC19.35■□□□□ 0.69
COL2A1P02458 RN7SL618P-201ENST00000477850 296 ntBASIC19.35■□□□□ 0.69
COL2A1P02458 AL132655.2-201ENST00000596276 594 ntBASIC19.35■□□□□ 0.69
COL2A1P02458 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
COL2A1P02458 AC139713.2-201ENST00000641328 2723 ntBASIC19.34■□□□□ 0.69
COL2A1P02458 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.34■□□□□ 0.69
COL2A1P02458 HFE2-205ENST00000497365 1419 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.34■□□□□ 0.69
COL2A1P02458 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL2A1P02458 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
COL2A1P02458 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.34■□□□□ 0.69
COL2A1P02458 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC19.34■□□□□ 0.69
COL2A1P02458 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.34■□□□□ 0.69
COL2A1P02458 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
COL2A1P02458 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.34■□□□□ 0.69
COL2A1P02458 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC19.34■□□□□ 0.69
COL2A1P02458 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC19.34■□□□□ 0.69
COL2A1P02458 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC19.34■□□□□ 0.69
COL2A1P02458 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC19.34■□□□□ 0.69
COL2A1P02458 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC19.34■□□□□ 0.69
COL2A1P02458 AC004233.3-201ENST00000607794 1269 ntBASIC19.34■□□□□ 0.69
COL2A1P02458 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC19.34■□□□□ 0.69
COL2A1P02458 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC19.34■□□□□ 0.69
COL2A1P02458 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
COL2A1P02458 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
COL2A1P02458 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL2A1P02458 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
COL2A1P02458 AC007613.1-201ENST00000572811 2597 ntBASIC19.33■□□□□ 0.69
COL2A1P02458 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC19.33■□□□□ 0.69
COL2A1P02458 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
COL2A1P02458 GGT3P-204ENST00000453783 1664 ntBASIC19.33■□□□□ 0.69
COL2A1P02458 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
COL2A1P02458 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
COL2A1P02458 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC19.33■□□□□ 0.68
COL2A1P02458 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.68
COL2A1P02458 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC19.33■□□□□ 0.68
COL2A1P02458 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 RN7SL692P-201ENST00000464677 288 ntBASIC19.33■□□□□ 0.68
COL2A1P02458 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC19.33■□□□□ 0.68
COL2A1P02458 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 AL603756.1-201ENST00000606511 2163 ntBASIC19.33■□□□□ 0.68
COL2A1P02458 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
COL2A1P02458 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.32■□□□□ 0.68
COL2A1P02458 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.32■□□□□ 0.68
COL2A1P02458 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.32■□□□□ 0.68
COL2A1P02458 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC19.32■□□□□ 0.68
COL2A1P02458 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC19.32■□□□□ 0.68
COL2A1P02458 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
COL2A1P02458 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL2A1P02458 EDF1-203ENST00000371649 790 ntTSL 2 BASIC19.32■□□□□ 0.68
COL2A1P02458 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC19.32■□□□□ 0.68
COL2A1P02458 CR383656.12-201ENST00000549567 513 ntBASIC19.32■□□□□ 0.68
COL2A1P02458 AC104794.3-201ENST00000566840 1248 ntBASIC19.32■□□□□ 0.68
COL2A1P02458 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL2A1P02458 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
COL2A1P02458 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
COL2A1P02458 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
COL2A1P02458 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.32■□□□□ 0.68
COL2A1P02458 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms