Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
SEMA3DO95025 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
SEMA3DO95025 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SEMA3DO95025 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.13■□□□□ 0.17
SEMA3DO95025 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.13■□□□□ 0.17
SEMA3DO95025 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.13■□□□□ 0.17
SEMA3DO95025 HNRNPDP1-201ENST00000439535 754 ntBASIC16.13■□□□□ 0.17
SEMA3DO95025 AC079781.3-201ENST00000449110 356 ntBASIC16.13■□□□□ 0.17
SEMA3DO95025 PPIE-208ENST00000470213 927 ntTSL 3 BASIC16.13■□□□□ 0.17
SEMA3DO95025 IGHV3-65-201ENST00000523210 341 ntBASIC16.13■□□□□ 0.17
SEMA3DO95025 KRT126P-201ENST00000549467 1181 ntBASIC16.13■□□□□ 0.17
SEMA3DO95025 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.13■□□□□ 0.17
SEMA3DO95025 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.13■□□□□ 0.17
SEMA3DO95025 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC16.13■□□□□ 0.17
SEMA3DO95025 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.13■□□□□ 0.17
SEMA3DO95025 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SEMA3DO95025 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC16.13■□□□□ 0.17
SEMA3DO95025 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.13■□□□□ 0.17
SEMA3DO95025 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SEMA3DO95025 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.13■□□□□ 0.17
SEMA3DO95025 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
SEMA3DO95025 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.12■□□□□ 0.17
SEMA3DO95025 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.12■□□□□ 0.17
SEMA3DO95025 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.12■□□□□ 0.17
SEMA3DO95025 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.12■□□□□ 0.17
SEMA3DO95025 AL356488.2-201ENST00000602755 427 ntBASIC16.12■□□□□ 0.17
SEMA3DO95025 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 AL031008.1-201ENST00000619963 541 ntBASIC16.12■□□□□ 0.17
SEMA3DO95025 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC16.12■□□□□ 0.17
SEMA3DO95025 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.12■□□□□ 0.17
SEMA3DO95025 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
SEMA3DO95025 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.12■□□□□ 0.17
SEMA3DO95025 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
SEMA3DO95025 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SEMA3DO95025 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 AL603756.1-201ENST00000606511 2163 ntBASIC16.11■□□□□ 0.17
SEMA3DO95025 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC16.11■□□□□ 0.17
SEMA3DO95025 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SEMA3DO95025 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.11■□□□□ 0.17
SEMA3DO95025 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.11■□□□□ 0.17
SEMA3DO95025 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SEMA3DO95025 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC16.11■□□□□ 0.17
SEMA3DO95025 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC16.11■□□□□ 0.17
SEMA3DO95025 SLC25A6P2-201ENST00000497974 877 ntBASIC16.11■□□□□ 0.17
SEMA3DO95025 AP002469.2-201ENST00000531724 424 ntBASIC16.11■□□□□ 0.17
SEMA3DO95025 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.11■□□□□ 0.17
SEMA3DO95025 CIPC-205ENST00000555437 566 ntTSL 3 BASIC16.11■□□□□ 0.17
SEMA3DO95025 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.11■□□□□ 0.17
SEMA3DO95025 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.11■□□□□ 0.17
SEMA3DO95025 MPDU1-223ENST00000582151 728 ntBASIC16.11■□□□□ 0.17
SEMA3DO95025 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC16.11■□□□□ 0.17
SEMA3DO95025 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC16.11■□□□□ 0.17
SEMA3DO95025 AC005593.1-201ENST00000624894 515 ntBASIC16.11■□□□□ 0.17
SEMA3DO95025 FAM215A-202ENST00000632077 792 ntBASIC16.11■□□□□ 0.17
SEMA3DO95025 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms