Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
GFRA3O60609 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.11■□□□□ 0.17
GFRA3O60609 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.11■□□□□ 0.17
GFRA3O60609 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC16.11■□□□□ 0.17
GFRA3O60609 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
GFRA3O60609 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
GFRA3O60609 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.11■□□□□ 0.17
GFRA3O60609 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.11■□□□□ 0.17
GFRA3O60609 AC026954.1-201ENST00000429771 1293 ntBASIC16.11■□□□□ 0.17
GFRA3O60609 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.11■□□□□ 0.17
GFRA3O60609 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC16.11■□□□□ 0.17
GFRA3O60609 PTPA-217ENST00000434095 870 ntTSL 2 BASIC16.11■□□□□ 0.17
GFRA3O60609 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.11■□□□□ 0.17
GFRA3O60609 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.11■□□□□ 0.17
GFRA3O60609 AC008267.1-201ENST00000474858 1069 ntBASIC16.11■□□□□ 0.17
GFRA3O60609 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC16.11■□□□□ 0.17
GFRA3O60609 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.11■□□□□ 0.17
GFRA3O60609 AL008638.5-201ENST00000623814 1298 ntBASIC16.11■□□□□ 0.17
GFRA3O60609 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
GFRA3O60609 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
GFRA3O60609 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
GFRA3O60609 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
GFRA3O60609 AL096828.2-201ENST00000567259 1965 ntBASIC16.11■□□□□ 0.17
GFRA3O60609 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
GFRA3O60609 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
GFRA3O60609 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
GFRA3O60609 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
GFRA3O60609 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.1■□□□□ 0.17
GFRA3O60609 LINC00895-201ENST00000629028 1637 ntBASIC16.1■□□□□ 0.17
GFRA3O60609 RPS3-201ENST00000278572 907 ntTSL 3 BASIC16.1■□□□□ 0.17
GFRA3O60609 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
GFRA3O60609 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 HNRNPA1P13-201ENST00000510646 963 ntBASIC16.1■□□□□ 0.17
GFRA3O60609 AC068587.3-201ENST00000526613 355 ntBASIC16.1■□□□□ 0.17
GFRA3O60609 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.1■□□□□ 0.17
GFRA3O60609 AC025048.3-201ENST00000590609 569 ntBASIC16.1■□□□□ 0.17
GFRA3O60609 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC16.1■□□□□ 0.17
GFRA3O60609 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
GFRA3O60609 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.1■□□□□ 0.17
GFRA3O60609 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
GFRA3O60609 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 AC131009.4-201ENST00000624048 1740 ntBASIC16.1■□□□□ 0.17
GFRA3O60609 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC16.1■□□□□ 0.17
GFRA3O60609 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC16.1■□□□□ 0.17
GFRA3O60609 TOP3BP1-201ENST00000420768 1380 ntBASIC16.1■□□□□ 0.17
GFRA3O60609 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC16.1■□□□□ 0.17
GFRA3O60609 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
GFRA3O60609 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
GFRA3O60609 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.09■□□□□ 0.17
GFRA3O60609 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
GFRA3O60609 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.09■□□□□ 0.17
GFRA3O60609 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 AC093484.2-201ENST00000580996 2166 ntBASIC16.09■□□□□ 0.17
GFRA3O60609 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.09■□□□□ 0.17
GFRA3O60609 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC16.09■□□□□ 0.17
GFRA3O60609 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.09■□□□□ 0.17
GFRA3O60609 FTH1P14-201ENST00000482930 551 ntBASIC16.09■□□□□ 0.17
GFRA3O60609 AC091804.1-201ENST00000486888 567 ntBASIC16.09■□□□□ 0.17
GFRA3O60609 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.09■□□□□ 0.17
GFRA3O60609 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC16.09■□□□□ 0.17
GFRA3O60609 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC16.09■□□□□ 0.17
GFRA3O60609 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.09■□□□□ 0.17
GFRA3O60609 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC16.09■□□□□ 0.17
GFRA3O60609 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
GFRA3O60609 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC16.09■□□□□ 0.17
GFRA3O60609 CASP16P-204ENST00000635032 809 ntBASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms