Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 AC006277.1-201ENST00000624348 1610 ntBASIC18.86■□□□□ 0.61
CHMP2AO43633 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CHMP2AO43633 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 CROCCP1-201ENST00000426910 5675 ntBASIC18.86■□□□□ 0.61
CHMP2AO43633 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP2AO43633 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP2AO43633 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 RNU1-129P-201ENST00000384064 167 ntBASIC18.86■□□□□ 0.61
CHMP2AO43633 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.86■□□□□ 0.61
CHMP2AO43633 MKNK2P1-201ENST00000437526 628 ntBASIC18.86■□□□□ 0.61
CHMP2AO43633 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP2AO43633 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
CHMP2AO43633 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 U1.21-201ENST00000580816 167 ntBASIC18.86■□□□□ 0.61
CHMP2AO43633 AL031055.1-201ENST00000606362 631 ntBASIC18.86■□□□□ 0.61
CHMP2AO43633 AL596442.2-201ENST00000610240 980 ntBASIC18.86■□□□□ 0.61
CHMP2AO43633 RNF216P1-203ENST00000404404 2427 ntBASIC18.86■□□□□ 0.61
CHMP2AO43633 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CHMP2AO43633 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
CHMP2AO43633 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.86■□□□□ 0.61
CHMP2AO43633 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.86■□□□□ 0.61
CHMP2AO43633 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CHMP2AO43633 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CHMP2AO43633 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CHMP2AO43633 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP2AO43633 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CHMP2AO43633 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.85■□□□□ 0.61
CHMP2AO43633 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CHMP2AO43633 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
CHMP2AO43633 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP2AO43633 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC18.85■□□□□ 0.61
CHMP2AO43633 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.85■□□□□ 0.61
CHMP2AO43633 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.85■□□□□ 0.61
CHMP2AO43633 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP2AO43633 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CHMP2AO43633 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CHMP2AO43633 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 AC002056.1-201ENST00000395613 760 ntBASIC18.85■□□□□ 0.61
CHMP2AO43633 YBX1P5-201ENST00000509441 847 ntBASIC18.85■□□□□ 0.61
CHMP2AO43633 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP2AO43633 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.85■□□□□ 0.61
CHMP2AO43633 THTPA-204ENST00000554970 569 ntTSL 4 BASIC18.85■□□□□ 0.61
CHMP2AO43633 THTPA-206ENST00000556015 535 ntTSL 3 BASIC18.85■□□□□ 0.61
CHMP2AO43633 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CHMP2AO43633 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.85■□□□□ 0.61
CHMP2AO43633 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC18.85■□□□□ 0.61
CHMP2AO43633 AC099522.2-201ENST00000607001 744 ntBASIC18.85■□□□□ 0.61
CHMP2AO43633 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.85■□□□□ 0.61
CHMP2AO43633 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.85■□□□□ 0.61
CHMP2AO43633 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CHMP2AO43633 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CHMP2AO43633 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CHMP2AO43633 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.85■□□□□ 0.61
CHMP2AO43633 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.85■□□□□ 0.61
CHMP2AO43633 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CHMP2AO43633 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.84■□□□□ 0.61
CHMP2AO43633 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP2AO43633 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP2AO43633 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP2AO43633 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC18.84■□□□□ 0.61
CHMP2AO43633 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP2AO43633 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.84■□□□□ 0.61
CHMP2AO43633 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP2AO43633 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP2AO43633 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP2AO43633 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP2AO43633 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.84■□□□□ 0.61
CHMP2AO43633 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.84■□□□□ 0.61
CHMP2AO43633 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.84■□□□□ 0.61
CHMP2AO43633 AL009183.1-201ENST00000603760 355 ntBASIC18.84■□□□□ 0.61
CHMP2AO43633 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP2AO43633 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CHMP2AO43633 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP2AO43633 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC18.84■□□□□ 0.61
CHMP2AO43633 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CHMP2AO43633 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.84■□□□□ 0.61
CHMP2AO43633 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms