Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN3O15551 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC18.33■□□□□ 0.52
CLDN3O15551 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.33■□□□□ 0.52
CLDN3O15551 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.33■□□□□ 0.52
CLDN3O15551 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN3O15551 AL078644.1-201ENST00000609881 752 ntBASIC18.33■□□□□ 0.52
CLDN3O15551 AC091812.2-201ENST00000619081 385 ntBASIC18.33■□□□□ 0.52
CLDN3O15551 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.33■□□□□ 0.52
CLDN3O15551 AC005915.1-201ENST00000624912 2018 ntBASIC18.33■□□□□ 0.52
CLDN3O15551 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.33■□□□□ 0.52
CLDN3O15551 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CLDN3O15551 AL391256.1-201ENST00000443260 1855 ntBASIC18.33■□□□□ 0.52
CLDN3O15551 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
CLDN3O15551 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 AC105020.1-201ENST00000435356 2205 ntBASIC18.33■□□□□ 0.52
CLDN3O15551 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
CLDN3O15551 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN3O15551 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN3O15551 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN3O15551 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
CLDN3O15551 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN3O15551 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC18.32■□□□□ 0.52
CLDN3O15551 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.32■□□□□ 0.52
CLDN3O15551 FAM58CP-201ENST00000435741 640 ntBASIC18.32■□□□□ 0.52
CLDN3O15551 ALG1L5P-201ENST00000482043 771 ntBASIC18.32■□□□□ 0.52
CLDN3O15551 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.32■□□□□ 0.52
CLDN3O15551 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.32■□□□□ 0.52
CLDN3O15551 AC112191.1-201ENST00000523689 701 ntBASIC18.32■□□□□ 0.52
CLDN3O15551 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
CLDN3O15551 AC106886.4-201ENST00000623557 2502 ntBASIC18.32■□□□□ 0.52
CLDN3O15551 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
CLDN3O15551 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.32■□□□□ 0.52
CLDN3O15551 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
CLDN3O15551 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC18.32■□□□□ 0.52
CLDN3O15551 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC18.32■□□□□ 0.52
CLDN3O15551 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
CLDN3O15551 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.31■□□□□ 0.52
CLDN3O15551 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CLDN3O15551 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC18.31■□□□□ 0.52
CLDN3O15551 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.31■□□□□ 0.52
CLDN3O15551 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
CLDN3O15551 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 AC002056.1-201ENST00000395613 760 ntBASIC18.31■□□□□ 0.52
CLDN3O15551 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.31■□□□□ 0.52
CLDN3O15551 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC18.31■□□□□ 0.52
CLDN3O15551 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.31■□□□□ 0.52
CLDN3O15551 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC18.31■□□□□ 0.52
CLDN3O15551 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
CLDN3O15551 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC18.31■□□□□ 0.52
CLDN3O15551 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
CLDN3O15551 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
CLDN3O15551 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC18.3■□□□□ 0.52
CLDN3O15551 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC18.3■□□□□ 0.52
CLDN3O15551 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
CLDN3O15551 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CLDN3O15551 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
CLDN3O15551 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms