Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
NPHP1O15259 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC21.11■□□□□ 0.97
NPHP1O15259 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 COMP-202ENST00000425807 2292 ntTSL 2 BASIC21.11■□□□□ 0.97
NPHP1O15259 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
NPHP1O15259 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NPHP1O15259 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC21.11■□□□□ 0.97
NPHP1O15259 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NPHP1O15259 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
NPHP1O15259 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP1O15259 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NPHP1O15259 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP1O15259 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP1O15259 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.1■□□□□ 0.97
NPHP1O15259 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.1■□□□□ 0.97
NPHP1O15259 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP1O15259 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC21.1■□□□□ 0.97
NPHP1O15259 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP1O15259 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP1O15259 AC091167.2-201ENST00000579581 588 ntBASIC21.1■□□□□ 0.97
NPHP1O15259 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC21.1■□□□□ 0.97
NPHP1O15259 AC003101.2-201ENST00000612557 442 ntBASIC21.1■□□□□ 0.97
NPHP1O15259 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 AL358472.5-202ENST00000641448 1267 ntBASIC21.1■□□□□ 0.97
NPHP1O15259 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
NPHP1O15259 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC21.1■□□□□ 0.97
NPHP1O15259 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP1O15259 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC21.1■□□□□ 0.97
NPHP1O15259 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NPHP1O15259 TOP3BP1-201ENST00000420768 1380 ntBASIC21.1■□□□□ 0.97
NPHP1O15259 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
NPHP1O15259 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP1O15259 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP1O15259 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
NPHP1O15259 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC21.09■□□□□ 0.97
NPHP1O15259 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.09■□□□□ 0.97
NPHP1O15259 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.09■□□□□ 0.97
NPHP1O15259 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 AP005018.1-201ENST00000525475 301 ntBASIC21.09■□□□□ 0.97
NPHP1O15259 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC21.09■□□□□ 0.97
NPHP1O15259 AC073592.8-201ENST00000624126 511 ntBASIC21.09■□□□□ 0.97
NPHP1O15259 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC21.09■□□□□ 0.97
NPHP1O15259 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC21.09■□□□□ 0.97
NPHP1O15259 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP1O15259 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP1O15259 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC21.09■□□□□ 0.97
NPHP1O15259 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC21.09■□□□□ 0.97
NPHP1O15259 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC21.09■□□□□ 0.97
NPHP1O15259 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NPHP1O15259 NARF-206ENST00000457415 1668 ntTSL 5 BASIC21.09■□□□□ 0.97
NPHP1O15259 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP1O15259 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP1O15259 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC21.08■□□□□ 0.97
NPHP1O15259 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP1O15259 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP1O15259 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP1O15259 ADAMTS16-203ENST00000511368 2682 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP1O15259 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP1O15259 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NPHP1O15259 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
NPHP1O15259 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC21.08■□□□□ 0.97
NPHP1O15259 AC092580.3-201ENST00000430932 139 ntBASIC21.08■□□□□ 0.97
NPHP1O15259 CRB3P1-201ENST00000449338 276 ntBASIC21.08■□□□□ 0.97
NPHP1O15259 SERBP1P5-201ENST00000510079 1181 ntBASIC21.08■□□□□ 0.97
NPHP1O15259 AC004233.3-201ENST00000607794 1269 ntBASIC21.08■□□□□ 0.97
NPHP1O15259 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC21.08■□□□□ 0.97
NPHP1O15259 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
NPHP1O15259 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NPHP1O15259 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms