Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
NPAS1Q99742 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC15.34■□□□□ 0.05
NPAS1Q99742 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.34■□□□□ 0.05
NPAS1Q99742 PMS2P1-201ENST00000431037 1228 ntBASIC15.34■□□□□ 0.05
NPAS1Q99742 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC15.34■□□□□ 0.05
NPAS1Q99742 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC15.34■□□□□ 0.05
NPAS1Q99742 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
NPAS1Q99742 AC010507.1-201ENST00000633895 436 ntBASIC15.34■□□□□ 0.05
NPAS1Q99742 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC15.34■□□□□ 0.05
NPAS1Q99742 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 SLC22A20-204ENST00000530038 1673 ntBASIC15.34■□□□□ 0.05
NPAS1Q99742 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
NPAS1Q99742 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
NPAS1Q99742 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
NPAS1Q99742 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
NPAS1Q99742 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC15.33■□□□□ 0.05
NPAS1Q99742 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.05
NPAS1Q99742 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NPAS1Q99742 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
NPAS1Q99742 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
NPAS1Q99742 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.33■□□□□ 0.04
NPAS1Q99742 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC15.33■□□□□ 0.04
NPAS1Q99742 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.33■□□□□ 0.04
NPAS1Q99742 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.33■□□□□ 0.04
NPAS1Q99742 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.33■□□□□ 0.04
NPAS1Q99742 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.33■□□□□ 0.04
NPAS1Q99742 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC15.33■□□□□ 0.04
NPAS1Q99742 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.33■□□□□ 0.04
NPAS1Q99742 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.33■□□□□ 0.04
NPAS1Q99742 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.33■□□□□ 0.04
NPAS1Q99742 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.33■□□□□ 0.04
NPAS1Q99742 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 LINC00554-201ENST00000564841 3011 ntBASIC15.33■□□□□ 0.04
NPAS1Q99742 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.33■□□□□ 0.04
NPAS1Q99742 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.33■□□□□ 0.04
NPAS1Q99742 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.33■□□□□ 0.04
NPAS1Q99742 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.33■□□□□ 0.04
NPAS1Q99742 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 KRT8P49-201ENST00000604166 1432 ntBASIC15.33■□□□□ 0.04
NPAS1Q99742 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.33■□□□□ 0.04
NPAS1Q99742 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
NPAS1Q99742 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
NPAS1Q99742 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC15.32■□□□□ 0.04
NPAS1Q99742 UBALD1-205ENST00000590891 2641 ntBASIC15.32■□□□□ 0.04
NPAS1Q99742 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.32■□□□□ 0.04
NPAS1Q99742 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
NPAS1Q99742 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC15.32■□□□□ 0.04
NPAS1Q99742 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.32■□□□□ 0.04
NPAS1Q99742 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC15.32■□□□□ 0.04
NPAS1Q99742 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
NPAS1Q99742 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC15.32■□□□□ 0.04
NPAS1Q99742 MED15P5-201ENST00000423150 992 ntBASIC15.32■□□□□ 0.04
NPAS1Q99742 FAM185BP-201ENST00000443595 716 ntBASIC15.32■□□□□ 0.04
NPAS1Q99742 HS6ST1P1-201ENST00000481504 1234 ntBASIC15.32■□□□□ 0.04
NPAS1Q99742 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
NPAS1Q99742 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.32■□□□□ 0.04
NPAS1Q99742 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC15.32■□□□□ 0.04
NPAS1Q99742 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC15.32■□□□□ 0.04
NPAS1Q99742 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC15.32■□□□□ 0.04
NPAS1Q99742 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
NPAS1Q99742 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.32■□□□□ 0.04
NPAS1Q99742 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
NPAS1Q99742 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms