Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC025580.3-201ENST00000617932 1424 ntBASIC16.7■□□□□ 0.26
VPS35Q96QK1 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
VPS35Q96QK1 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
VPS35Q96QK1 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 AC004832.2-201ENST00000426397 482 ntBASIC16.69■□□□□ 0.26
VPS35Q96QK1 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS35Q96QK1 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS35Q96QK1 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC16.69■□□□□ 0.26
VPS35Q96QK1 AC002347.1-201ENST00000569543 541 ntBASIC16.69■□□□□ 0.26
VPS35Q96QK1 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS35Q96QK1 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC16.69■□□□□ 0.26
VPS35Q96QK1 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 FER1L4-210ENST00000615531 5998 ntBASIC16.69■□□□□ 0.26
VPS35Q96QK1 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 AC006277.1-201ENST00000624348 1610 ntBASIC16.69■□□□□ 0.26
VPS35Q96QK1 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
VPS35Q96QK1 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS35Q96QK1 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 HARS-204ENST00000438307 1789 ntTSL 2 BASIC16.69■□□□□ 0.26
VPS35Q96QK1 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
VPS35Q96QK1 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 NFIC-211ENST00000641145 8399 ntBASIC16.68■□□□□ 0.26
VPS35Q96QK1 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 FALEC-201ENST00000416894 566 ntTSL 3 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 MED16-214ENST00000617672 554 ntTSL 5 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 AL513190.1-201ENST00000621254 727 ntBASIC16.68■□□□□ 0.26
VPS35Q96QK1 AC092865.6-201ENST00000642101 219 ntBASIC16.68■□□□□ 0.26
VPS35Q96QK1 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
VPS35Q96QK1 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 AC105020.1-201ENST00000435356 2205 ntBASIC16.68■□□□□ 0.26
VPS35Q96QK1 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC16.68■□□□□ 0.26
VPS35Q96QK1 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 COX10-202ENST00000429152 875 ntTSL 2 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.67■□□□□ 0.26
VPS35Q96QK1 AL139011.1-202ENST00000642063 584 ntBASIC16.67■□□□□ 0.26
VPS35Q96QK1 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
VPS35Q96QK1 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
VPS35Q96QK1 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC16.66■□□□□ 0.26
VPS35Q96QK1 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
VPS35Q96QK1 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms