Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC16.9■□□□□ 0.3
VPS39Q96JC1 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
VPS39Q96JC1 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
VPS39Q96JC1 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
VPS39Q96JC1 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
VPS39Q96JC1 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.3
VPS39Q96JC1 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 AC092364.2-201ENST00000596710 2692 ntBASIC16.89■□□□□ 0.29
VPS39Q96JC1 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 TERC-201ENST00000602385 541 ntBASIC16.89■□□□□ 0.29
VPS39Q96JC1 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 AL022326.1-202ENST00000641533 845 ntBASIC16.89■□□□□ 0.29
VPS39Q96JC1 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VPS39Q96JC1 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
VPS39Q96JC1 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 NCF1C-201ENST00000438382 1427 ntBASIC16.88■□□□□ 0.29
VPS39Q96JC1 ALOX12P2-203ENST00000570921 1945 ntBASIC16.88■□□□□ 0.29
VPS39Q96JC1 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 AC026691.1-201ENST00000602502 2017 ntBASIC16.88■□□□□ 0.29
VPS39Q96JC1 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 EMD-201ENST00000369835 966 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 RBM17P3-201ENST00000417687 1192 ntBASIC16.88■□□□□ 0.29
VPS39Q96JC1 HLA-J-202ENST00000469281 1241 ntBASIC16.88■□□□□ 0.29
VPS39Q96JC1 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 AC064862.7-201ENST00000604520 867 ntBASIC16.88■□□□□ 0.29
VPS39Q96JC1 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 AL139288.1-201ENST00000623748 933 ntBASIC16.88■□□□□ 0.29
VPS39Q96JC1 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.88■□□□□ 0.29
VPS39Q96JC1 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VPS39Q96JC1 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.87■□□□□ 0.29
VPS39Q96JC1 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS39Q96JC1 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS39Q96JC1 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS39Q96JC1 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VPS39Q96JC1 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS39Q96JC1 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS39Q96JC1 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS39Q96JC1 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
VPS39Q96JC1 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS39Q96JC1 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VPS39Q96JC1 AC006538.1-201ENST00000567905 1585 ntBASIC16.87■□□□□ 0.29
VPS39Q96JC1 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.87■□□□□ 0.29
VPS39Q96JC1 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VPS39Q96JC1 FOSL1P1-201ENST00000511041 816 ntBASIC16.87■□□□□ 0.29
VPS39Q96JC1 AL732292.2-201ENST00000609649 430 ntBASIC16.87■□□□□ 0.29
VPS39Q96JC1 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC16.87■□□□□ 0.29
VPS39Q96JC1 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms