Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 KRT8P39-201ENST00000396270 1433 ntBASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
SHROOM3Q8TF72 ALOX12P2-203ENST00000570921 1945 ntBASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 PON3-203ENST00000427422 894 ntTSL 3 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 MTRF1LP2-201ENST00000506027 1122 ntBASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 CFL1-202ENST00000524553 860 ntTSL 2 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 MIR3909-201ENST00000579518 119 ntBASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 AC012569.1-201ENST00000591191 1524 ntBASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 GGT3P-204ENST00000453783 1664 ntBASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 AL118508.1-201ENST00000613502 2345 ntBASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 AL078644.1-201ENST00000609881 752 ntBASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 AL139011.1-202ENST00000642063 584 ntBASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
SHROOM3Q8TF72 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 HMGA1P7-201ENST00000406908 502 ntBASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 CYMP-203ENST00000474680 1263 ntBASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 AL596442.2-201ENST00000610240 980 ntBASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 AC092865.6-201ENST00000642101 219 ntBASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.08■□□□□ 0.33
SHROOM3Q8TF72 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.08■□□□□ 0.32
SHROOM3Q8TF72 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC17.07■□□□□ 0.32
SHROOM3Q8TF72 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM3Q8TF72 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM3Q8TF72 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM3Q8TF72 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SHROOM3Q8TF72 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
SHROOM3Q8TF72 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms