Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 AP002414.1-201ENST00000391405 1147 ntBASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 KRT16P4-201ENST00000453883 522 ntBASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.2■□□□□ 0.18
CLHC1Q8NHS4 AL590787.1-201ENST00000568856 1315 ntBASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 AL021920.2-201ENST00000624828 1351 ntBASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 NKAPP1-205ENST00000585790 367 ntBASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 AL353135.1-201ENST00000606729 504 ntBASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
CLHC1Q8NHS4 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 SMIM11A-202ENST00000399295 1074 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 MIR1224-201ENST00000408193 85 ntBASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 UPK3BP1-201ENST00000428678 509 ntBASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 NT5C-211ENST00000582170 653 ntTSL 3 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CLHC1Q8NHS4 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms