Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 RNA5SP416-201ENST00000516838 111 ntBASIC16.41■□□□□ 0.22
VRK3Q8IV63 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 AC023141.13-201ENST00000604991 943 ntBASIC16.41■□□□□ 0.22
VRK3Q8IV63 AL139011.1-202ENST00000642063 584 ntBASIC16.41■□□□□ 0.22
VRK3Q8IV63 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
VRK3Q8IV63 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.41■□□□□ 0.22
VRK3Q8IV63 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 KRT8P39-201ENST00000396270 1433 ntBASIC16.4■□□□□ 0.22
VRK3Q8IV63 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 AC023274.1-201ENST00000418278 595 ntBASIC16.4■□□□□ 0.22
VRK3Q8IV63 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.4■□□□□ 0.22
VRK3Q8IV63 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 PGAM5P1-201ENST00000518923 814 ntBASIC16.4■□□□□ 0.22
VRK3Q8IV63 KRT18P58-201ENST00000527480 1120 ntBASIC16.4■□□□□ 0.22
VRK3Q8IV63 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 WDR88-203ENST00000592765 651 ntTSL 5 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.4■□□□□ 0.22
VRK3Q8IV63 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC16.4■□□□□ 0.22
VRK3Q8IV63 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
VRK3Q8IV63 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.39■□□□□ 0.22
VRK3Q8IV63 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 AC092919.2-201ENST00000623631 1645 ntBASIC16.39■□□□□ 0.21
VRK3Q8IV63 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 AL031432.2-201ENST00000566714 459 ntBASIC16.39■□□□□ 0.21
VRK3Q8IV63 AL928711.1-201ENST00000570165 459 ntBASIC16.39■□□□□ 0.21
VRK3Q8IV63 AP001350.2-201ENST00000625104 1094 ntBASIC16.39■□□□□ 0.21
VRK3Q8IV63 AC007064.4-201ENST00000637740 555 ntBASIC16.39■□□□□ 0.21
VRK3Q8IV63 AL645728.2-201ENST00000641974 660 ntBASIC16.39■□□□□ 0.21
VRK3Q8IV63 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 SLC9A3P2-201ENST00000447821 2021 ntBASIC16.39■□□□□ 0.21
VRK3Q8IV63 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VRK3Q8IV63 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VRK3Q8IV63 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VRK3Q8IV63 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC16.38■□□□□ 0.21
VRK3Q8IV63 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms