Protein–RNA interactions for Protein: Q86U70

LDB1, LIM domain-binding protein 1, humanhuman

Predicted RBP Predictions only

Length 411 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1Q86U70 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LDB1Q86U70 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.8■□□□□ 0.28
LDB1Q86U70 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.8■□□□□ 0.28
LDB1Q86U70 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC16.8■□□□□ 0.28
LDB1Q86U70 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.8■□□□□ 0.28
LDB1Q86U70 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC16.8■□□□□ 0.28
LDB1Q86U70 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.8■□□□□ 0.28
LDB1Q86U70 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 AP002490.2-201ENST00000524791 560 ntBASIC16.8■□□□□ 0.28
LDB1Q86U70 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.8■□□□□ 0.28
LDB1Q86U70 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.8■□□□□ 0.28
LDB1Q86U70 AL121894.2-201ENST00000602977 491 ntBASIC16.8■□□□□ 0.28
LDB1Q86U70 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.8■□□□□ 0.28
LDB1Q86U70 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
LDB1Q86U70 AC008667.4-201ENST00000607370 168 ntBASIC16.8■□□□□ 0.28
LDB1Q86U70 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.8■□□□□ 0.28
LDB1Q86U70 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.8■□□□□ 0.28
LDB1Q86U70 AL773604.1-201ENST00000617417 272 ntBASIC16.8■□□□□ 0.28
LDB1Q86U70 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.8■□□□□ 0.28
LDB1Q86U70 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC16.8■□□□□ 0.28
LDB1Q86U70 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.8■□□□□ 0.28
LDB1Q86U70 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.8■□□□□ 0.28
LDB1Q86U70 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
LDB1Q86U70 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LDB1Q86U70 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 PMS2P1-201ENST00000431037 1228 ntBASIC16.79■□□□□ 0.28
LDB1Q86U70 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB1Q86U70 RNA5SP419-201ENST00000515908 135 ntBASIC16.79■□□□□ 0.28
LDB1Q86U70 IGHV3-65-201ENST00000523210 341 ntBASIC16.79■□□□□ 0.28
LDB1Q86U70 AC107918.2-201ENST00000530817 355 ntBASIC16.79■□□□□ 0.28
LDB1Q86U70 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC16.79■□□□□ 0.28
LDB1Q86U70 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 AC004790.2-201ENST00000623588 572 ntBASIC16.79■□□□□ 0.28
LDB1Q86U70 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC16.79■□□□□ 0.28
LDB1Q86U70 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC16.79■□□□□ 0.28
LDB1Q86U70 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.79■□□□□ 0.28
LDB1Q86U70 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
LDB1Q86U70 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB1Q86U70 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.79■□□□□ 0.28
LDB1Q86U70 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
LDB1Q86U70 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
LDB1Q86U70 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC16.79■□□□□ 0.28
LDB1Q86U70 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
LDB1Q86U70 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.78■□□□□ 0.28
LDB1Q86U70 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 AC018695.7-201ENST00000624587 2492 ntBASIC16.78■□□□□ 0.28
LDB1Q86U70 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
LDB1Q86U70 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC16.78■□□□□ 0.28
LDB1Q86U70 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 CSF3-203ENST00000394148 622 ntTSL 3 BASIC16.78■□□□□ 0.28
LDB1Q86U70 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.78■□□□□ 0.28
LDB1Q86U70 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.78■□□□□ 0.28
LDB1Q86U70 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.78■□□□□ 0.28
LDB1Q86U70 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC16.78■□□□□ 0.28
LDB1Q86U70 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.78■□□□□ 0.28
LDB1Q86U70 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.78■□□□□ 0.28
LDB1Q86U70 MPDU1-223ENST00000582151 728 ntBASIC16.78■□□□□ 0.28
LDB1Q86U70 SLC25A6P4-201ENST00000586535 553 ntBASIC16.78■□□□□ 0.28
LDB1Q86U70 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
LDB1Q86U70 AC116407.3-201ENST00000623905 1129 ntBASIC16.78■□□□□ 0.28
LDB1Q86U70 AC005593.1-201ENST00000624894 515 ntBASIC16.78■□□□□ 0.28
LDB1Q86U70 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
LDB1Q86U70 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.78■□□□□ 0.28
LDB1Q86U70 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms