Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC10.46□□□□□ -0.73
LINC00643Q86TS7 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 HMGA2-204ENST00000403681 4473 ntAPPRIS P3 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 RHOV-201ENST00000220507 1705 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 AC027601.5-201ENST00000624065 2482 ntBASIC10.46□□□□□ -0.74
LINC00643Q86TS7 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 PTPA-205ENST00000357197 2653 ntTSL 2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC10.46□□□□□ -0.74
LINC00643Q86TS7 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 CEMIP-202ENST00000356249 7297 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 SHPK-201ENST00000225519 3838 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 VIPR1-202ENST00000433647 3161 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 SFMBT2-203ENST00000379713 2402 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 AC020658.6-201ENST00000623564 1870 ntBASIC10.45□□□□□ -0.74
LINC00643Q86TS7 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 MIR149-201ENST00000384879 89 ntBASIC10.45□□□□□ -0.74
LINC00643Q86TS7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 SLC25A1P3-201ENST00000395415 828 ntBASIC10.45□□□□□ -0.74
LINC00643Q86TS7 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 AC100791.3-201ENST00000617619 330 ntBASIC10.45□□□□□ -0.74
LINC00643Q86TS7 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 ZNF275-201ENST00000370249 5920 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC10.45□□□□□ -0.74
LINC00643Q86TS7 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 AC009949.1-201ENST00000623048 1830 ntBASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC10.44□□□□□ -0.74
LINC00643Q86TS7 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC10.44□□□□□ -0.74
Retrieved 100 of 98,524 protein–RNA pairs in 49.7 ms