Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
CDH6P55285 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.51■□□□□ 0.39
CDH6P55285 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.51■□□□□ 0.39
CDH6P55285 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.51■□□□□ 0.39
CDH6P55285 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.51■□□□□ 0.39
CDH6P55285 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.51■□□□□ 0.39
CDH6P55285 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.51■□□□□ 0.39
CDH6P55285 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.51■□□□□ 0.39
CDH6P55285 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.51■□□□□ 0.39
CDH6P55285 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC17.51■□□□□ 0.39
CDH6P55285 AC008667.4-201ENST00000607370 168 ntBASIC17.51■□□□□ 0.39
CDH6P55285 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.51■□□□□ 0.39
CDH6P55285 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH6P55285 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
CDH6P55285 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH6P55285 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH6P55285 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
CDH6P55285 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 AC006538.1-201ENST00000567905 1585 ntBASIC17.5■□□□□ 0.39
CDH6P55285 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 CENPM-204ENST00000402420 688 ntTSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.5■□□□□ 0.39
CDH6P55285 MPDU1-223ENST00000582151 728 ntBASIC17.5■□□□□ 0.39
CDH6P55285 AL773604.1-201ENST00000617417 272 ntBASIC17.5■□□□□ 0.39
CDH6P55285 FAM215A-202ENST00000632077 792 ntBASIC17.5■□□□□ 0.39
CDH6P55285 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 HARS-204ENST00000438307 1789 ntTSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
CDH6P55285 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
CDH6P55285 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
CDH6P55285 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC17.49■□□□□ 0.39
CDH6P55285 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC17.49■□□□□ 0.39
CDH6P55285 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.49■□□□□ 0.39
CDH6P55285 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
CDH6P55285 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.49■□□□□ 0.39
CDH6P55285 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
CDH6P55285 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
CDH6P55285 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
CDH6P55285 HLA-J-202ENST00000469281 1241 ntBASIC17.49■□□□□ 0.39
CDH6P55285 IGHV3-65-201ENST00000523210 341 ntBASIC17.49■□□□□ 0.39
CDH6P55285 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC17.49■□□□□ 0.39
CDH6P55285 AC005593.1-201ENST00000624894 515 ntBASIC17.49■□□□□ 0.39
CDH6P55285 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC17.49■□□□□ 0.39
CDH6P55285 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.49■□□□□ 0.39
CDH6P55285 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
CDH6P55285 WT1-209ENST00000530998 2421 ntTSL 2 BASIC17.49■□□□□ 0.39
CDH6P55285 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
CDH6P55285 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.49■□□□□ 0.39
CDH6P55285 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.48■□□□□ 0.39
CDH6P55285 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
CDH6P55285 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH6P55285 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.48■□□□□ 0.39
CDH6P55285 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.48■□□□□ 0.39
CDH6P55285 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC17.48■□□□□ 0.39
CDH6P55285 AC107918.2-201ENST00000530817 355 ntBASIC17.48■□□□□ 0.39
CDH6P55285 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC17.48■□□□□ 0.39
CDH6P55285 AL662844.1-201ENST00000546340 181 ntBASIC17.48■□□□□ 0.39
CDH6P55285 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms