Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 BTBD7P1-201ENST00000447253 1453 ntBASIC20.64■□□□□ 0.89
NUP98P52948 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC20.64■□□□□ 0.89
NUP98P52948 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP98P52948 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
NUP98P52948 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP98P52948 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP98P52948 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP98P52948 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20.64■□□□□ 0.89
NUP98P52948 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC20.64■□□□□ 0.89
NUP98P52948 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC20.64■□□□□ 0.89
NUP98P52948 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP98P52948 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP98P52948 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
NUP98P52948 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.64■□□□□ 0.89
NUP98P52948 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC20.64■□□□□ 0.89
NUP98P52948 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.64■□□□□ 0.89
NUP98P52948 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.64■□□□□ 0.89
NUP98P52948 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.89
NUP98P52948 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
NUP98P52948 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
NUP98P52948 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
NUP98P52948 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
NUP98P52948 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.63■□□□□ 0.89
NUP98P52948 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP98P52948 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP98P52948 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
NUP98P52948 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC20.63■□□□□ 0.89
NUP98P52948 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
NUP98P52948 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP98P52948 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
NUP98P52948 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
NUP98P52948 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC20.63■□□□□ 0.89
NUP98P52948 IMPDH1P4-201ENST00000445028 1534 ntBASIC20.62■□□□□ 0.89
NUP98P52948 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
NUP98P52948 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NUP98P52948 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC20.62■□□□□ 0.89
NUP98P52948 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC20.62■□□□□ 0.89
NUP98P52948 AC020765.3-201ENST00000613051 740 ntBASIC20.62■□□□□ 0.89
NUP98P52948 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP98P52948 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP98P52948 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC20.62■□□□□ 0.89
NUP98P52948 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC20.62■□□□□ 0.89
NUP98P52948 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NUP98P52948 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP98P52948 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC20.62■□□□□ 0.89
NUP98P52948 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NUP98P52948 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
NUP98P52948 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC20.62■□□□□ 0.89
NUP98P52948 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
NUP98P52948 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP98P52948 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
NUP98P52948 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
NUP98P52948 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.62■□□□□ 0.89
NUP98P52948 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.62■□□□□ 0.89
NUP98P52948 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
NUP98P52948 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
NUP98P52948 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC20.61■□□□□ 0.89
NUP98P52948 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 AL391825.1-201ENST00000457671 1364 ntBASIC20.61■□□□□ 0.89
NUP98P52948 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC20.61■□□□□ 0.89
NUP98P52948 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC20.61■□□□□ 0.89
NUP98P52948 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
NUP98P52948 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
NUP98P52948 DGCR5-201ENST00000399539 862 ntBASIC20.61■□□□□ 0.89
NUP98P52948 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC20.61■□□□□ 0.89
NUP98P52948 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC20.61■□□□□ 0.89
NUP98P52948 AC135586.1-201ENST00000539323 574 ntBASIC20.61■□□□□ 0.89
NUP98P52948 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC20.61■□□□□ 0.89
NUP98P52948 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC20.61■□□□□ 0.89
NUP98P52948 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC20.61■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms