Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 AC079781.3-201ENST00000449110 356 ntBASIC17.77■□□□□ 0.44
LIG3P49916 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.77■□□□□ 0.44
LIG3P49916 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.77■□□□□ 0.44
LIG3P49916 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
LIG3P49916 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
LIG3P49916 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC17.77■□□□□ 0.44
LIG3P49916 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.77■□□□□ 0.44
LIG3P49916 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIG3P49916 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
LIG3P49916 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.77■□□□□ 0.43
LIG3P49916 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
LIG3P49916 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC17.77■□□□□ 0.43
LIG3P49916 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.43
LIG3P49916 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIG3P49916 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIG3P49916 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
LIG3P49916 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIG3P49916 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIG3P49916 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
LIG3P49916 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
LIG3P49916 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LIG3P49916 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.76■□□□□ 0.43
LIG3P49916 AC092068.3-201ENST00000587894 2016 ntBASIC17.76■□□□□ 0.43
LIG3P49916 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC17.76■□□□□ 0.43
LIG3P49916 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
LIG3P49916 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 FAM220CP-201ENST00000395253 831 ntBASIC17.76■□□□□ 0.43
LIG3P49916 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 AF238378.1-201ENST00000526806 358 ntBASIC17.76■□□□□ 0.43
LIG3P49916 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
LIG3P49916 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC17.76■□□□□ 0.43
LIG3P49916 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.76■□□□□ 0.43
LIG3P49916 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.76■□□□□ 0.43
LIG3P49916 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 BDKRB1-201ENST00000216629 1687 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC17.76■□□□□ 0.43
LIG3P49916 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 PLCB1-201ENST00000338037 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIG3P49916 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC17.76■□□□□ 0.43
LIG3P49916 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LIG3P49916 MED29-202ENST00000594368 1471 ntTSL 2 BASIC17.75■□□□□ 0.43
LIG3P49916 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LIG3P49916 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
LIG3P49916 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.75■□□□□ 0.43
LIG3P49916 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
LIG3P49916 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.75■□□□□ 0.43
LIG3P49916 AC104692.2-201ENST00000603054 253 ntBASIC17.75■□□□□ 0.43
LIG3P49916 AL121912.1-201ENST00000603683 238 ntBASIC17.75■□□□□ 0.43
LIG3P49916 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.75■□□□□ 0.43
LIG3P49916 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.75■□□□□ 0.43
LIG3P49916 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
LIG3P49916 CYP2T1P-202ENST00000641596 2535 ntBASIC17.75■□□□□ 0.43
LIG3P49916 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.75■□□□□ 0.43
LIG3P49916 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
LIG3P49916 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LIG3P49916 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC17.75■□□□□ 0.43
LIG3P49916 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIG3P49916 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.74■□□□□ 0.43
LIG3P49916 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
LIG3P49916 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.74■□□□□ 0.43
LIG3P49916 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIG3P49916 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
LIG3P49916 AC005915.1-201ENST00000624912 2018 ntBASIC17.74■□□□□ 0.43
LIG3P49916 SCHIP1-205ENST00000482804 1799 ntTSL 5 BASIC17.74■□□□□ 0.43
LIG3P49916 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms