Protein–RNA interactions for Protein: P41273

TNFSF9, Tumor necrosis factor ligand superfamily member 9, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF9P41273 ACTG1P14-201ENST00000446382 1122 ntBASIC18.14■□□□□ 0.49
TNFSF9P41273 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.14■□□□□ 0.49
TNFSF9P41273 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.14■□□□□ 0.49
TNFSF9P41273 AP002490.2-201ENST00000524791 560 ntBASIC18.14■□□□□ 0.49
TNFSF9P41273 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.14■□□□□ 0.49
TNFSF9P41273 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC18.14■□□□□ 0.49
TNFSF9P41273 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC18.14■□□□□ 0.49
TNFSF9P41273 AL596442.2-201ENST00000610240 980 ntBASIC18.14■□□□□ 0.49
TNFSF9P41273 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC18.14■□□□□ 0.49
TNFSF9P41273 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.14■□□□□ 0.49
TNFSF9P41273 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
TNFSF9P41273 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC18.14■□□□□ 0.49
TNFSF9P41273 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
TNFSF9P41273 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.14■□□□□ 0.49
TNFSF9P41273 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.14■□□□□ 0.49
TNFSF9P41273 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
TNFSF9P41273 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
TNFSF9P41273 KRT8P39-201ENST00000396270 1433 ntBASIC18.14■□□□□ 0.49
TNFSF9P41273 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
TNFSF9P41273 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 FLJ38576-201ENST00000623820 2459 ntBASIC18.13■□□□□ 0.49
TNFSF9P41273 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 AC092171.3-201ENST00000610122 2651 ntBASIC18.13■□□□□ 0.49
TNFSF9P41273 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
TNFSF9P41273 AL512652.2-201ENST00000625156 1716 ntBASIC18.13■□□□□ 0.49
TNFSF9P41273 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC18.13■□□□□ 0.49
TNFSF9P41273 PMS2P4-201ENST00000412466 1052 ntBASIC18.13■□□□□ 0.49
TNFSF9P41273 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 AL671277.1-201ENST00000429656 993 ntBASIC18.13■□□□□ 0.49
TNFSF9P41273 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.13■□□□□ 0.49
TNFSF9P41273 AP006288.1-201ENST00000446065 395 ntBASIC18.13■□□□□ 0.49
TNFSF9P41273 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC18.13■□□□□ 0.49
TNFSF9P41273 KRT8P48-201ENST00000515599 1220 ntBASIC18.13■□□□□ 0.49
TNFSF9P41273 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.13■□□□□ 0.49
TNFSF9P41273 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.13■□□□□ 0.49
TNFSF9P41273 MIR3909-201ENST00000579518 119 ntBASIC18.13■□□□□ 0.49
TNFSF9P41273 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC18.13■□□□□ 0.49
TNFSF9P41273 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.13■□□□□ 0.49
TNFSF9P41273 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TNFSF9P41273 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
TNFSF9P41273 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC18.13■□□□□ 0.49
TNFSF9P41273 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC18.13■□□□□ 0.49
TNFSF9P41273 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
TNFSF9P41273 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
TNFSF9P41273 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TNFSF9P41273 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
TNFSF9P41273 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
TNFSF9P41273 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
TNFSF9P41273 AL135744.1-201ENST00000565098 629 ntBASIC18.12■□□□□ 0.49
TNFSF9P41273 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TNFSF9P41273 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC18.12■□□□□ 0.49
TNFSF9P41273 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
TNFSF9P41273 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC18.12■□□□□ 0.49
TNFSF9P41273 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC18.12■□□□□ 0.49
TNFSF9P41273 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC18.12■□□□□ 0.49
TNFSF9P41273 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC18.12■□□□□ 0.49
TNFSF9P41273 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.12■□□□□ 0.49
TNFSF9P41273 CA12-203ENST00000422263 2556 ntTSL 2 BASIC18.12■□□□□ 0.49
TNFSF9P41273 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.12■□□□□ 0.49
TNFSF9P41273 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC18.12■□□□□ 0.49
TNFSF9P41273 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.12■□□□□ 0.49
TNFSF9P41273 AC016027.1-202ENST00000607927 1699 ntBASIC18.12■□□□□ 0.49
TNFSF9P41273 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
TNFSF9P41273 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
TNFSF9P41273 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.12■□□□□ 0.49
TNFSF9P41273 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.11■□□□□ 0.49
TNFSF9P41273 AGGF1P2-201ENST00000426656 2106 ntBASIC18.11■□□□□ 0.49
TNFSF9P41273 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
TNFSF9P41273 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.11■□□□□ 0.49
TNFSF9P41273 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC18.11■□□□□ 0.49
TNFSF9P41273 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms