Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
PTPN4P29074 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN4P29074 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
PTPN4P29074 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.95■□□□□ 0.3
PTPN4P29074 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 MED22-202ENST00000371999 987 ntTSL 3 BASIC16.95■□□□□ 0.3
PTPN4P29074 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN4P29074 SLC25A1P3-201ENST00000395415 828 ntBASIC16.95■□□□□ 0.3
PTPN4P29074 TNFSF13-204ENST00000396542 726 ntTSL 3 BASIC16.95■□□□□ 0.3
PTPN4P29074 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 DANCR-204ENST00000444958 709 ntTSL 3 BASIC16.95■□□□□ 0.3
PTPN4P29074 AF186996.4-201ENST00000467186 377 ntBASIC16.95■□□□□ 0.3
PTPN4P29074 AC104640.1-201ENST00000562617 2109 ntBASIC16.95■□□□□ 0.3
PTPN4P29074 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN4P29074 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
PTPN4P29074 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
PTPN4P29074 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
PTPN4P29074 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN4P29074 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN4P29074 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
PTPN4P29074 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.95■□□□□ 0.3
PTPN4P29074 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 AC093525.9-201ENST00000624961 1746 ntBASIC16.94■□□□□ 0.3
PTPN4P29074 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 AC005104.2-201ENST00000427818 678 ntBASIC16.94■□□□□ 0.3
PTPN4P29074 KRT18P67-201ENST00000432816 1264 ntBASIC16.94■□□□□ 0.3
PTPN4P29074 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC16.94■□□□□ 0.3
PTPN4P29074 SCN5A-214ENST00000612060 714 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 AC092364.2-201ENST00000596710 2692 ntBASIC16.94■□□□□ 0.3
PTPN4P29074 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
PTPN4P29074 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
PTPN4P29074 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
PTPN4P29074 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.93■□□□□ 0.3
PTPN4P29074 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.93■□□□□ 0.3
PTPN4P29074 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
PTPN4P29074 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
PTPN4P29074 TLE1-202ENST00000376484 666 ntTSL 3 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms