Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.55■□□□□ 0.24
CDH3P22223 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH3P22223 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.55■□□□□ 0.24
CDH3P22223 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.55■□□□□ 0.24
CDH3P22223 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC16.55■□□□□ 0.24
CDH3P22223 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.55■□□□□ 0.24
CDH3P22223 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
CDH3P22223 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH3P22223 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CDH3P22223 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 PP12613-201ENST00000424958 2230 ntBASIC16.54■□□□□ 0.24
CDH3P22223 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.54■□□□□ 0.24
CDH3P22223 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH3P22223 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CDH3P22223 AP001094.4-201ENST00000579008 2176 ntBASIC16.54■□□□□ 0.24
CDH3P22223 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC16.54■□□□□ 0.24
CDH3P22223 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
CDH3P22223 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.54■□□□□ 0.24
CDH3P22223 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC16.54■□□□□ 0.24
CDH3P22223 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC16.54■□□□□ 0.24
CDH3P22223 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.54■□□□□ 0.24
CDH3P22223 AGTRAP-205ENST00000400895 786 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH3P22223 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.54■□□□□ 0.24
CDH3P22223 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC16.54■□□□□ 0.24
CDH3P22223 PRSS29P-201ENST00000440800 595 ntBASIC16.54■□□□□ 0.24
CDH3P22223 VN2R19P-201ENST00000442399 1052 ntBASIC16.54■□□□□ 0.24
CDH3P22223 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.54■□□□□ 0.24
CDH3P22223 AC092865.5-201ENST00000545435 363 ntBASIC16.54■□□□□ 0.24
CDH3P22223 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
CDH3P22223 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC16.54■□□□□ 0.24
CDH3P22223 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
CDH3P22223 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CDH3P22223 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.54■□□□□ 0.24
CDH3P22223 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
CDH3P22223 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
CDH3P22223 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
CDH3P22223 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.53■□□□□ 0.24
CDH3P22223 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH3P22223 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH3P22223 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH3P22223 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
CDH3P22223 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CDH3P22223 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CDH3P22223 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.53■□□□□ 0.24
CDH3P22223 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH3P22223 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.53■□□□□ 0.24
CDH3P22223 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.53■□□□□ 0.24
CDH3P22223 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.53■□□□□ 0.24
CDH3P22223 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.53■□□□□ 0.24
CDH3P22223 RIN3-211ENST00000557762 517 ntTSL 3 BASIC16.53■□□□□ 0.24
CDH3P22223 AC040169.1-201ENST00000565382 521 ntBASIC16.53■□□□□ 0.24
CDH3P22223 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
CDH3P22223 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC16.53■□□□□ 0.24
CDH3P22223 AC010654.1-201ENST00000615722 808 ntBASIC16.53■□□□□ 0.24
CDH3P22223 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
CDH3P22223 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
CDH3P22223 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.53■□□□□ 0.24
CDH3P22223 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.52■□□□□ 0.24
CDH3P22223 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.52■□□□□ 0.24
CDH3P22223 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
CDH3P22223 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms