Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HMGB1P09429 MIR4751-201ENST00000578027 74 ntBASIC19.82■□□□□ 0.76
HMGB1P09429 ACTL9-202ENST00000612068 1252 ntBASIC19.82■□□□□ 0.76
HMGB1P09429 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC19.82■□□□□ 0.76
HMGB1P09429 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGB1P09429 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 AL671710.1-201ENST00000610245 2349 ntBASIC19.82■□□□□ 0.76
HMGB1P09429 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HMGB1P09429 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
HMGB1P09429 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC19.82■□□□□ 0.76
HMGB1P09429 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB1P09429 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.82■□□□□ 0.76
HMGB1P09429 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 AC012569.1-201ENST00000591191 1524 ntBASIC19.81■□□□□ 0.76
HMGB1P09429 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
HMGB1P09429 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB1P09429 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19.81■□□□□ 0.76
HMGB1P09429 VN2R19P-201ENST00000442399 1052 ntBASIC19.81■□□□□ 0.76
HMGB1P09429 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 RNA5SP415-201ENST00000517246 115 ntBASIC19.81■□□□□ 0.76
HMGB1P09429 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGB1P09429 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.81■□□□□ 0.76
HMGB1P09429 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HMGB1P09429 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
HMGB1P09429 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
HMGB1P09429 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
HMGB1P09429 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
HMGB1P09429 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.8■□□□□ 0.76
HMGB1P09429 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.8■□□□□ 0.76
HMGB1P09429 MIR4515-201ENST00000584082 81 ntBASIC19.8■□□□□ 0.76
HMGB1P09429 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.8■□□□□ 0.76
HMGB1P09429 ME2P1-201ENST00000426028 1970 ntBASIC19.8■□□□□ 0.76
HMGB1P09429 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.8■□□□□ 0.76
HMGB1P09429 GGT3P-204ENST00000453783 1664 ntBASIC19.8■□□□□ 0.76
HMGB1P09429 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.8■□□□□ 0.76
HMGB1P09429 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC19.8■□□□□ 0.76
HMGB1P09429 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
HMGB1P09429 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
HMGB1P09429 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HMGB1P09429 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
HMGB1P09429 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.79■□□□□ 0.76
HMGB1P09429 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HMGB1P09429 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HMGB1P09429 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.79■□□□□ 0.76
HMGB1P09429 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
HMGB1P09429 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 CRYGEP-201ENST00000412192 528 ntBASIC19.79■□□□□ 0.76
HMGB1P09429 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
HMGB1P09429 AC079776.4-201ENST00000511039 504 ntBASIC19.79■□□□□ 0.76
HMGB1P09429 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC19.79■□□□□ 0.76
HMGB1P09429 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC19.79■□□□□ 0.76
HMGB1P09429 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC19.79■□□□□ 0.76
HMGB1P09429 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC19.79■□□□□ 0.76
HMGB1P09429 PCDHB19P-201ENST00000570871 2371 ntBASIC19.79■□□□□ 0.76
HMGB1P09429 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC19.79■□□□□ 0.76
HMGB1P09429 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HMGB1P09429 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HMGB1P09429 AL031731.1-201ENST00000642131 2094 ntBASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms