Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AC007967.4-201ENST00000614700 386 ntBASIC20.04■□□□□ 0.8
COL1A1P02452 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.04■□□□□ 0.8
COL1A1P02452 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
COL1A1P02452 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
COL1A1P02452 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC20.03■□□□□ 0.8
COL1A1P02452 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.03■□□□□ 0.8
COL1A1P02452 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC20.03■□□□□ 0.8
COL1A1P02452 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.03■□□□□ 0.8
COL1A1P02452 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 FAM220BP-201ENST00000377689 816 ntBASIC20.03■□□□□ 0.8
COL1A1P02452 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 SERBP1P5-201ENST00000510079 1181 ntBASIC20.03■□□□□ 0.8
COL1A1P02452 CR383656.12-201ENST00000549567 513 ntBASIC20.03■□□□□ 0.8
COL1A1P02452 QPRT-203ENST00000562473 579 ntTSL 3 BASIC20.03■□□□□ 0.8
COL1A1P02452 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 RPS15-212ENST00000593052 629 ntTSL 2 BASIC20.03■□□□□ 0.8
COL1A1P02452 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC20.03■□□□□ 0.8
COL1A1P02452 AC073592.8-201ENST00000624126 511 ntBASIC20.03■□□□□ 0.8
COL1A1P02452 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
COL1A1P02452 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC20.03■□□□□ 0.8
COL1A1P02452 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
COL1A1P02452 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
COL1A1P02452 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC20.02■□□□□ 0.8
COL1A1P02452 AC078925.2-201ENST00000624013 1973 ntBASIC20.02■□□□□ 0.8
COL1A1P02452 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
COL1A1P02452 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 TSSK5P-201ENST00000423978 907 ntBASIC20.02■□□□□ 0.8
COL1A1P02452 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC20.02■□□□□ 0.8
COL1A1P02452 COQ4-205ENST00000609948 956 ntTSL 2 BASIC20.02■□□□□ 0.8
COL1A1P02452 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.02■□□□□ 0.8
COL1A1P02452 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC20.02■□□□□ 0.8
COL1A1P02452 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
COL1A1P02452 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
COL1A1P02452 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
COL1A1P02452 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
COL1A1P02452 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC20.02■□□□□ 0.79
COL1A1P02452 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.79
COL1A1P02452 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
COL1A1P02452 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.01■□□□□ 0.79
COL1A1P02452 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC20.01■□□□□ 0.79
COL1A1P02452 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
COL1A1P02452 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC20.01■□□□□ 0.79
COL1A1P02452 HLA-H-201ENST00000383620 1096 ntBASIC20.01■□□□□ 0.79
COL1A1P02452 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC20.01■□□□□ 0.79
COL1A1P02452 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC20.01■□□□□ 0.79
COL1A1P02452 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC20.01■□□□□ 0.79
COL1A1P02452 AC018529.1-201ENST00000613063 361 ntBASIC20.01■□□□□ 0.79
COL1A1P02452 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC20.01■□□□□ 0.79
COL1A1P02452 AC025048.6-201ENST00000634326 1161 ntBASIC20.01■□□□□ 0.79
COL1A1P02452 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL1A1P02452 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL1A1P02452 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC20.01■□□□□ 0.79
COL1A1P02452 AC100757.3-201ENST00000622361 1406 ntBASIC20.01■□□□□ 0.79
COL1A1P02452 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
COL1A1P02452 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC20.01■□□□□ 0.79
COL1A1P02452 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
COL1A1P02452 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC20■□□□□ 0.79
COL1A1P02452 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms