Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC092068.3-201ENST00000587894 2016 ntBASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 FAM86GP-201ENST00000448322 971 ntBASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC109322.1-201ENST00000524499 1264 ntBASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 LINC00895-201ENST00000629028 1637 ntBASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 HMGN1P19-201ENST00000436976 333 ntBASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC067863.1-201ENST00000494933 530 ntBASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC027307.2-201ENST00000591252 911 ntBASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AC026471.1-201ENST00000564629 3026 ntBASIC16.78■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PTMS-202ENST00000389462 773 ntTSL 2 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RPL30-202ENST00000396070 440 ntTSL 2 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 RBPMS2P1-201ENST00000437762 623 ntBASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CNN2P2-201ENST00000443536 909 ntBASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 CNN2P3-201ENST00000450201 906 ntBASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 LINC01225-203ENST00000563550 1244 ntBASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 AL136317.3-201ENST00000618497 906 ntBASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
C1QTNF3-AMACRE9PGA6 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
C1QTNF3-AMACRE9PGA6 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms